RNA id: CI01000052_00836931_00841228.mRNA


Basic Information

Item Value
RNA id CI01000052_00836931_00841228.mRNA
length 2791
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000052_00836931_00841228
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 835368 ~ 841433 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATAAAGCAGCGTCTGGCTGTGTAAAGCTGCATTTATGTCTTTAATGTTTGCGTTAAAGATATTAAACTCTTATTTATTTAGAGTTTTTTTTAGTGTTTAGACGTTTTACTCCTTTTTATTATTAGTGTTATTCTCTTCTTCGTTCACAGACGTTCAAAATCTAGGCTAGCTACTCATAGCAGAGTTTCGGACATTGATTTTTTAAAGGGACATTTCACCCCTCCCCTTCCTCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAGTACATTTTTTTTTTTAAACTCCGATTACTTTTTTTAGTAGTACATAAAAAGATGCTTGGCATGAGTTTTAGGCACTGACACCCTTAGGGGCCATTCATCACACTGAACACGTTTTTGCTTAAAAATGCCGCAGGATCTAGAGACCTTTTTTATTTTTTATTTGAACCACTTTCAAACTTAAATTTGAACTTTAACGCTGTAATTTTTTTTTTTAGAACACTGTGTAGAACATTGTTTTTCTATGTAAAACATTAGCTAGACAGACGTCTTTGACCATTGCGCTTGTTTCACATCTTTTGCCTGAAATGTCATTATTAAAAACGCAACGCTCAAGTTTTCAACTTGTATACAAAGTGTAGAGTTCCTTTTAAGATACAGCTACCATCTGAAATACTATGTCTAAATAGGGGTGTCCTTTGAGTTTCTGGGCTCCTGGTACAGTTTGTTGCCCAAGCTCCCTCAGCTGAGACCTTCCTCCCTATTACGGTGCCCCTGTTTAATGTGAATTTATGTGGCACTATTTGTTTTGCTAATCTTGCTAAAATTGCTTTTGTTAGAGGAGGAAATTCTTGCCATTCCCCAGCGCAGATTCACTATCATAATTTTATCTGTCTGCATGCTTAGACGTGCTCTGTAAACGGTCATGTGCGCCTTCTAAACTTTTCTAAACAATGTGCCAGGATGAAATTATGTCTGTCCATGGAGACTTTAATAACCCTGCAGGAATACAAACGTAGAGCTCCTGAGAAACTGCCACAACTGCCACAACCCACATTTTTCCATATTCACAGCAAAATGTATGAGTCACTGCTGAGGGAAATAGATTCCATCTTAAACCACCTGGCAGTTCATGTACGAGATTTACACTGATCTGATCTGAGAGCATGACTTAAAGGTGCTTCCATGCTGAGAAATGATTAAGGGTGCGGTAAGAAAGCTTATTCCAGACCTGCCTGTACAGATAACCAATACCAGAAGCTGTGTAGGCATGACAGCAGAGTTATGATGTGCTTTTTTTAGTGTGTCTGTGATTATTAAACAATAACACATTGTCAGTAAAGACATTTTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTTAAACTGGCTGCCTGGTTTTCCGTCCAACATAAACCTTCCAGAGCAGAGATTAAATTTCACCAAAGTCTGTTCATGAACTCTCTCACTTCTCTCTTGAATCAAACTCTTTCTTCCATTTTCATGCACCTGTAACTGTAGCTTAGCCAGAGGGACACCTACTTAATCTCATGGAAGGAGGTTAAACAAGCCTAACATGTCTACCGATGTGTGTGCAGACAATAAATATGCTTTGATAAAAACTTTATCACTGCTGAAGCACAGGCTGGGTGACTGCTACGCTATTTTCACACAGGCTTTATGGAGGAACTGGGTCTGGATCTTTGACGTTTATTGCTTTTATGATAAGCGGATCAGTGCTCCTGAAAACAATGGAAAAAATGAGATAGGTCAAGCTTTAAGACATTTTGATAGGCAAAGGACAAAAAAACAACGTGTCCAGAGGAGATTCAAGTCCATGGTAAGGTTTGGAAGTATGTCCTACAGCGACCAGACTCCACCCAGCCCCAGCAGGACCAGCAACAGTAACTCTGGGGCGCAGTATGCTACTGCCGCGCTGGGCGTGGGCCTCATTGCTCTGGGGATTGTCATGATTGTGTGGAGCGTGGTGCCGGCGGGGTCCGGAGGGAACAGCTCCAATTCGGGAACGAACCCCAGTCAAGTTAGGGAGACCTCGTCCGTGGCTTTCGTCCTAGTGGGGGGAGGAGTGGCGCTGCTGCTGCTGTCTGTATGTCTGAGTGTACGGAACAAACGCCGAGCAGCCAGGGGACAGGAAGCCGGCAGTACACCCGCTAACACACAGGAGGAGGGGGCTACAATGGACCAACTAGCTCAGAACTACATGGTCCCCACTTATGAGGAGGTGGTTATGAGTGGCCAGTATCCCATCAGTCAGTCCTCTGAGCGCCACAACAGTGTCACACAGCTGCCAGCCTATGAGGAGCTAGAGGAAGGCCTGAACACCGTGGATGATGGATCCAGCCCATCACGCAGACCTTCATCCCAAATCGACCCCAGCACTGGAGCGGGTGGACGCAGAAATAGCCGTCCCGGTCGCAAGCTGATTCCCCTTAAAATGAGGCGCATCAGATCTGACAACCTAAGAAGGAAAAGCTTAGGCGATATCCAGCAGAGCAACGTGTTCACCATCGAACCCCTCACTCCGCCCCCACAGTATGATGATAAGATCCCTCCACTTCCTCCTAACACACAAGAGTGAACCCATGCTGGAGATTTACACTGACATTGAGATGAAGTGTCCACCTCCTTTATGAAATACTACAGCACTGAACTGCATATTACTCCTCTGGATAGGATATGCCACTATCAGCAGCACAGAGTTCACAGTGTTCTGTAAAGGTGGAGCGCCTTCAGAATGTCTTCCTGTGTTGGCTGTACATTTCCTGTTTAGAAAAAAACCCTTA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253295 lncRNA upstream 19636 811332 ~ 813564 (+) True G223293
TU253380 lncRNA upstream 59287 775842 ~ 776081 (+) True G223376
TU253345 lncRNA upstream 64856 718697 ~ 770512 (+) True G223341
TU253346 lncRNA upstream 98603 734821 ~ 736765 (+) True G223342
TU253359 lncRNA upstream 150600 684545 ~ 684768 (+) True G223355
TU253390 lncRNA downstream 79518 920951 ~ 921183 (+) True G223386
TU253490 lncRNA downstream 151381 992814 ~ 993014 (+) True G223476
TU253494 lncRNA downstream 158925 1000358 ~ 1000639 (+) True G223480
TU253464 lncRNA downstream 177198 1018631 ~ 1019051 (+) True G223450
TU253497 lncRNA downstream 178736 1020169 ~ 1020655 (+) True G223482
CI01000052_00793472_00831585.mRNA mRNA upstream 3415 793472 ~ 831953 (+) False CI01000052_00793472_00831585
CI01000052_00714377_00725358.mRNA mRNA upstream 109979 714377 ~ 725389 (+) True CI01000052_00714377_00725358
CI01000052_00702155_00711896.mRNA mRNA upstream 123472 702155 ~ 711896 (+) True CI01000052_00702155_00711896
CI01000052_00496215_00499293.mRNA mRNA upstream 335644 496215 ~ 499724 (+) True CI01000052_00496215_00499293
CI01000052_00437783_00438718.mRNA mRNA upstream 396619 437278 ~ 438749 (+) True CI01000052_00437783_00438718
CI01000052_00906265_00916799.mRNA mRNA downstream 63123 904556 ~ 916813 (+) True CI01000052_00906265_00916799
CI01000052_01044855_01046432.mRNA mRNA downstream 203422 1044855 ~ 1046617 (+) True CI01000052_01044855_01046432
CI01000052_01143235_01145343.mRNA mRNA downstream 301723 1143156 ~ 1147150 (+) True CI01000052_01143235_01145343
CI01000052_01295531_01298937.mRNA mRNA downstream 452761 1294194 ~ 1299203 (+) True CI01000052_01295531_01298937
CI01000052_01368837_01373810.mRNA mRNA downstream 527404 1368837 ~ 1374198 (+) True CI01000052_01368837_01373810
TU253572 other downstream 429059 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 1207893 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 1257107 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 2589703 3431136 ~ 3460136 (+) True G224953

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071294 False 2054 mRNA 0.44 3 NC_007119.7 26701038 ~ 26709959 (-)