CI01000052_00906265_00916799 (SEMA3B)


Basic Information

Item Value
gene id CI01000052_00906265_00916799
gene name SEMA3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 904556 ~ 916813 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000052_00906265_00916799.mRNA
TTATAAATATACTGCATTAAATAGATTGTTATAGATACACTCAATCTAATCAAGTTATTTTATAACTTGTTTAGCTCTTTGACGCTTTGAGTCCTTCATGGGACAATGGGTCAGTGTCACATTGTCCTCTGGAACTTAAAGGAGAAGTGCCTAATATCTGAAGTTCAGTGTGTGTGTGTATGCGTTTCTTGAGCACATTTAAACAGATGTTCAGTTCAGGGTTCATTCTGCTGGTAAAAGCCCACTGTTAGTCAGAGAGAGAAGATGGAGTCAAGCATAATTACAGTCCAAACAGCAGGAACATGTGCTACTGAAACTGAAGAGTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCGATGACTCTTATCTTTTCTCGGTTCTTCTTGTCTTGAATGTTGTTCTCTAGTCATGTTTGGTCTTCCCTTTCCATCTCTTCTCTTCCTCTTTAAGGTTATATCATCTCTGCTCTCTCTTCCTGCTCTTCTTGTCTCTTGTCTTCTCCTGGTTTCTCTGTTCATTTTGTCCCTGGTTAACCCTTGTTGTCTTCTCTTTTCTTGAATCTTCTTCTCTAGTCGTCTTATCTTTGGTCTTCTCTTTTCGTTTAGTCTCATCTTGTCTTTTTATCTCCTCTTTTTCGTCTTGTCCCTTTTTTACTGTCTAGTCTGTTTTCTTGTTTTTTGTCTCTAATTGTCTCTTCTTGACATAAATTCTCTTCTCACTTCGCCTTTGGTCTTATCTTCTCATTTCACCTTGTCTTTTCTCTAGTCATCTCATCTAGTCTATTGCTATCTAGTGTTGTTTTGTCTCTGATTGTCAGTGGCTGTCTTTTCTTGTCTCTTCTGGTCTCATCTCGTCTCAAATCTTCTATTTTCTTCTCAAATCTTCTTCTCTCTGGTTAACTCTTGTTTTGTGTTATTGTCTCTTCTTGTCTTGAACCTTCTCCTCTAATTTCCTCATCTTCCTCGTCTCTTGTCTAGTACCTCTAGTCTTATCTTCTCATCTACTTCTTTTTCATCTGGTCTTGCTTCTACTCATCTCTGGACATCTCATCTAGTCTCTTGCTGTCTGGTTTACTCTACTCTTGTCTTTTCTCATCTCTTGTTTTGAATCTTCTCTAGTCATCTCAACCTTGGTCTTCTCTTCTCATACAGTATTTTCTCTTCTTGTCTCATGTCATCTCATCGTGTCTCTCTTCTTCTCTGGCTATCTTGTCCAGTCTTTTCTCTTGTTGTTTTTGCTCATCTTATCTCTAGTTGTATCTTCTTGACTTAAATCTTCTCTGGTCTCACCTTTGGTCTTCTGTTCTTGTTTCATTTTGTCTCTTCTCTAGTCCTCTCATCTCTGTCTCATCTCTGATTGTCTGTTGCTGTCTCTTACTGTCTCATCTCATCTCAAATCTTCTGTTATCTCCTCTCATTTCCTCCTCGTCCCATGTCGTCTTTTTGCGTCTCATGTCATCCATCTTGTCTCATGTCGTCTCTTCTCTTTTGCATTCCTCTCTTTCGCTCCATGCTTCATCCCTGCATCCTCTCCCTCTACCCTGGAATCCGGATGTTCCCACTCCCTTATGTTGTCGTAGTGATTCCAGGCACTCTGGGAAATGTGGCATGCTCCAGCGAGCACATTCATAAAGGAAAAGAGAAACAGAGAGACTATAGGTGTCCATGTATGTCAGTCAATGTGTCTTTTTATGTGTGAAAGAGAGAGCATGAGAGATTACAGAGGGTTCCGGGATCACAGTGAGCAGGCAAAGACGGACTGTGTAAACTATGTAAAAGTGCTTCACCACTATAATCGGACTCACCTGTACGCCTGTGGGACTGGGGCTTTCCACCCTACCTGTGCTTATGTGGAGGTGGGACAGAAGCTAGAGGATCATGTGTTTAGAATCGATCCCTCTCTGGTAGAAGATGGAAAAGGAAGGAGTCCGTATGACCCACGCCACACGTCAGCATCTGTTCTGATTGAGCCCAAGTTTATAGCGGCATTTGGTGTTCCCGAGAGCGAGAATCCTGATGATGATAAAGTCTTCTTCTTCTTCAGAGAAACTGCTGTAGAAGCTCAGGGATTCGGGAAGAATGATATGGGAGGACAGCGCAGTCTAGTAAATAAGTGGACAACATTTCTGAAGGCTCGTCTTGTGTGTTCTGTACCAGGCAATGATGGCACTGAAACGCATTTTGATGAACTTAGGGATGTGTTTCTGCTGCAGACCCGTGATAGAAAGAACCCTCTGATCTACACTGTCTTTACAACCTCCAGTAGTGTATTTCAAGGATCTGCAGTGTGTCTCTATACCATGAATGACATTCGGCGGGCATTTTTAGGGCCTTTTGCCCATAAAGAAGGGCCCAATTATCAGTGGGTTCCATTCCAGGGTAAAGTGCCATACCCACGGCCAGGCATGTGTCCCAGTAAGACCTTCGGCAGTTTTGAGTCAACTAAAGGTTTTCCTGATAACGTAATCCAGTTTGCAAGGCATCATCCATTAATGTTTAATCCAGTCACTCCACTGGGGGGTCGGCCACTGTTCCTGCGTACCGGAATACCATACACCTTCACTCAGATTACCGTAGACCGCGTCAATGCAGCTGATGGACACTACGATGTAATGTTCATTGGCACAGATGTGGGCTCTGTGCTGAAGGTGATCTCTGTGCCCAAGGGAAGCTGGAGTAACACAGAGCTTCTGCTGGAGGAGCTTCAGGTCTTTAAGGTGCCTCTGCACCGCTGCAGTATGTACGGTAAAGCCTGTGCCGAGTGCTGCCTGGCTCGAGATCCATACTGCGCCTGGGACGGACACACCTGCACACGCTATCTGCCAAACACAAAACGAAGGTTCCGGCGTCAGGATGTGAGGAATGGGGATCCTAATGCTCTCTGCTCAGGAGACCATCAGAAGCAGCGTGTCCTGGAGAAGAGGCTGTACGCTGTGGATGGAAGCAGCTCCTTCCTGGAATGTATCCCAAAATCACTACAGGCCCAGATTACATGGACCTATCAGAGGCATCCGGAAAACCCACGGGAGGAGGTCCGTCTAGATGACCGTGTTTTGCAGACCGAGCGAGGCCTGTTGCTGAGACGAGCTGTGCGTAGAGATGGCGGCGTGTATCAGTGTCACGCAATGGAACACGGATTCATCCAGACCCTCCTTGCCATCACGCTGGAGATTTTACCTTTGGCTGGCCCCGCCCCCTCTGCTCTTAACCCTCGCAGCCCCGCCCACTCCCACACCAATCACGGGCAGTCCACCAATCAAAAGCTGTGGTACAGGGACTTCATGCAGTTGGTGGATCACCCAAACCTAAACACAGTTGACCAGATCTGTGAGCAAGTTTGGTCACGCAAGCACAGCCTATCAGGGAAGGCTGCGCCAGGTCCAGCTAATGATGCACCGGATCACGACCCGCTGCACTCTAAAAAGTGGAAGCACCTGAAGGAAACTGAGATGGACACAGCATTAATGTACAGGGGCATTATGAGGAATGTGGTCTGGGACCAGCTTGCACTTCAGATAAACATGAGGTTGTGGTGGAACAGGATACAGCCAGATTTGGGATGAGGTGACTCCTTAAA

Function

symbol description
sema3b Enables neuropilin binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Orthologous to human SEMA3B (semaphorin 3B).

GO: NA

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000052_00906265_00916799.mRNA True 3577 mRNA 0.46 15 904556 916813

Neighbor

gene id symbol gene type direction distance location
CI01000052_00836931_00841228 TMEM51A coding upstream 63123 835368 ~ 841433 (+)
CI01000052_00793472_00831585 KAZNA coding upstream 72603 793472 ~ 831953 (+)
CI01000052_00714377_00725358 ZYMND12 coding upstream 179167 714377 ~ 725389 (+)
CI01000052_00702155_00711896 SLC16A1, MCT1A, SLC16A1A, SLC16A1B coding upstream 192660 702155 ~ 711896 (+)
CI01000052_00496215_00499293 NA coding upstream 404832 496215 ~ 499724 (+)
CI01000052_01044855_01046432 NA coding downstream 128042 1044855 ~ 1046617 (+)
CI01000052_01143235_01145343 NA coding downstream 226343 1143156 ~ 1147150 (+)
CI01000052_01295531_01298937 NA coding downstream 377381 1294194 ~ 1299203 (+)
CI01000052_01368837_01373810 OPN7C coding downstream 452024 1368837 ~ 1374198 (+)
CI01000052_01383491_01401660 NA coding downstream 465337 1382150 ~ 1402229 (+)
G223376 NA non-coding upstream 128475 775842 ~ 776081 (+)
G223341 NA non-coding upstream 134044 718697 ~ 770512 (+)
G223342 NA non-coding upstream 167791 734821 ~ 736765 (+)
G223355 NA non-coding upstream 219788 684545 ~ 684768 (+)
G223386 NA non-coding downstream 4138 920951 ~ 921183 (+)
G223476 NA non-coding downstream 76001 992814 ~ 993014 (+)
G223480 NA non-coding downstream 83545 1000358 ~ 1000639 (+)
G223450 NA non-coding downstream 101818 1018631 ~ 1019051 (+)
G223482 NA non-coding downstream 103356 1020169 ~ 1020655 (+)
G223545 NA other downstream 353679 1270492 ~ 1270927 (+)
G223694 NA other downstream 1132513 2049326 ~ 2104299 (+)
G224953 NA other downstream 2514323 3431136 ~ 3460136 (+)

Expression


Co-expression Network