G223342


Basic Information

Item Value
gene id G223342
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 734821 ~ 736765 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU253346
ATTTGAGGTTGGCAGCCTCAAATACAAAGCACACACAAATATTGGGTGCAATAATAAATTTTAAATTACAACAAACTGTGCTATTAATTACAACCAAGTAATTACTCTTCCATTCAAAAGTTTGGGGTCAACAAGATTGTTTTTGAAAAATCTCTAATGCTCACCATAAGGCTGCATTTATATGATCAAAAATACATTTTGATCAAATACAGTGATACATTTTTCAGGATTCTTTGATGAACAAAGTTCAATACAACAGCATTTTTGAAATAGAAATCTTTTGCAACATTCATTTCCTTTTGAAAGACAAGTCTATATTTGTAGTTGACATTTATCTCACCGTGTTCACCATCCTGGATGGTGTCAGTGGTTCACTAGGTTTTGAAACACCACAATTCTTACTCAATATTTCACAACACTGATAAACATGGTAGAATGTTTATTTATTTGGTTTTGAATAAACCAGTTACCTGACTAATTAATTCCCAATAAAACAGTACACTATATAGACCAACTTTAACCAACCAGGTGCACCAACAGATCTGAAGCTCATACCAGACTGACTAATTTCCGGAGGAAATGAAAGTCATATACTCACTGCAGCACAGAGAATCACCCCTTAAAGGGATAGTTCATGTAAGCTAAGTCAATTATGGTTACTTGTATCTGCCTGAGGCTCAATCAGTAAACGTATCCATAGACTCAGAACATACAGCACGTCCCTCACTTCCCCCTTCTGTCAGTTCTGCGGCAGCTGTCTCACTGCGGGTTAAGAAACACGACTGACTCTCACACTCACACCAAATCCAGAGCGAGTGAGGATTTCAGGGTAACCTACTGTGTTAAGCACAGTATAGACACAGGGTTAACCTACTTCAGAGGTATGCTGTGAGGGTAAGGTGAGCTAGAATTAGATACAGGTAGATAAACAGACAAAACACAAGACAAGTAATCCCCATTAACAGCCACAACAGCCAATCACACAGTGCCTGGATAATACAACACAATTATTCAATATAAACTACCATTCAAAAGTTTGGGGTTGTCTCTTATATGCCCATTTAGGCTGTATTTATTTGATCAAAAATATAGTAAAAAATTAAAACTTAAAATAAATTTGAATATATTTTAAAATGTAATTTACTCCTGTGATGGCAAAGCTGAATTTTCAACAGTCTTTACTCCAGTCTTCAATGTCACATGAAATCATACTCAAGAAGCATTTCATTCATTGTTCATCAATGTTGAAAACATTTGTGCGGTTTAATATTTTTTTCAGGATATTTTGAATAGAACTTGTTTGATTGTTTTGTTACAAAAGATGTCACTTTTGATCAATCTTACTGGCCCTAAACTTTTGAATGGTGGTGCAAGTGAAAATTTCATATATTGAGTTGCATTTTGAGTGTTCTGAATACTTGTCATTCAGCTGCCAATGAGAAAGCAGTACTCAAAACTACATTACCATATTTAAATTCATCCTGCAGATTTTCAACCACAATCATCACCCCAAAAAAAAAAAAAAAAAAAAAAGCCATGTTGGCTTACCATTCATAAACAAGCGGGACCACCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU253346 True 1573 lncRNA 0.35 2 734821 736765

Neighbor

gene id symbol gene type direction distance location
CI01000052_00714377_00725358 ZYMND12 coding upstream 9432 714377 ~ 725389 (+)
CI01000052_00702155_00711896 SLC16A1, MCT1A, SLC16A1A, SLC16A1B coding upstream 22925 702155 ~ 711896 (+)
CI01000052_00496215_00499293 NA coding upstream 235097 496215 ~ 499724 (+)
CI01000052_00437783_00438718 NA coding upstream 296072 437278 ~ 438749 (+)
CI01000052_00430871_00437100 NA coding upstream 297699 429733 ~ 437122 (+)
CI01000052_00793472_00831585 KAZNA coding downstream 56707 793472 ~ 831953 (+)
CI01000052_00836931_00841228 TMEM51A coding downstream 98603 835368 ~ 841433 (+)
CI01000052_00906265_00916799 SEMA3B coding downstream 167791 904556 ~ 916813 (+)
CI01000052_01044855_01046432 NA coding downstream 308090 1044855 ~ 1046617 (+)
CI01000052_01143235_01145343 NA coding downstream 406391 1143156 ~ 1147150 (+)
G223355 NA non-coding upstream 50053 684545 ~ 684768 (+)
G223353 NA non-coding upstream 50728 683838 ~ 684093 (+)
G223352 NA non-coding upstream 52407 682187 ~ 682414 (+)
G223304 NA non-coding upstream 138140 596469 ~ 596681 (+)
G223298 NA non-coding upstream 153650 580900 ~ 581171 (+)
G223376 NA non-coding downstream 39077 775842 ~ 776081 (+)
G223386 NA non-coding downstream 184186 920951 ~ 921183 (+)
G223476 NA non-coding downstream 256049 992814 ~ 993014 (+)
G223480 NA non-coding downstream 263593 1000358 ~ 1000639 (+)
G223545 NA other downstream 533727 1270492 ~ 1270927 (+)
G223694 NA other downstream 1312561 2049326 ~ 2104299 (+)
G224953 NA other downstream 2694371 3431136 ~ 3460136 (+)

Expression


Co-expression Network