RNA id: CI01000052_00702155_00711896.mRNA



Basic Information


Item Value
RNA id CI01000052_00702155_00711896.mRNA
length 1383
RNA type mRNA
GC content 0.51
exon number 4
gene id CI01000052_00702155_00711896
representative True

Chromosome Information


Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 702155 ~ 711896 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGCCGCCAGCGACAGGAGGGCCGGTGGGCTACACTCCTCCCGAGGGCGGCTGGGGCTGGGCAGTGGTGGTAGGGGCCTTCATCAGCATTGGCTTCTCCTATGCCTTCCCCAAATCCATTACGGTGTTCTTCAAAGAGATTGAGGTGATCTTCAATGCCACCAGCAGCCAAGTGTCATGGATCTCCTCAATCATGCTGGCTGTCATGTATGCAGGAGGACCAATCAGCAGTATTCTGGTGAATAAGTATGGTAGTCGACCCATCATGATGGCTGGAGGCTGTCTGTCTGGCACAGGATTAGTCGCTGCATCGTTCTGTAACACAGTGGAGGGTCTTTACTTCTGTGTGGGAGTTATAGGCGGACTGGGTTTGGCTTTTAATCTGAATCCAGCGTTGACCATGATTGGCAAATACTTTTACAAGCGGCGGCCAATAGCTAATGGCATCGCGATGGCGGGCAGCCCAGTGTTCTTGTCCACCCTGGCCCCATTGAACAGCTGGCTGTTTGATCATTTCGGGTGGAGGGGCAGTTTTCTCATCTTGGGAGGAGCTTTGCTGAACTGCTGTGTTGCGGGGTCGCTAATGCGGCCCATTGGACCAAAACCACAACCTGCCATTTCAAAAGAGGATGGCGAACCCAAACGTCAAGAGAAAAAAACATGCCTGCAGACCATCAACAGCTTTCTGGATCTGACCCTGTTTACTCACCGAGGCTTCTTGCTGTACCTGCTCGGAAACGTCATCATGTTCTTTGGCCTCTTCGCGCCACTTGTGTTCCTCAGTAACTACGCGAAGAGTAAAGACATTTCCAAGGATAAGGCTGCGTTCTTGTTGTCCATCCTGGCCTTTACTGACATGATTGCTCGGCCATCCATGGGCCTGGTGGCCAATACACGCTGGGTCCGTCCACGCATTCAGTACTTCTTTGCCGCATCTGTGCTGTATAATGGTGTCTGCCACTTGATGGCGCCATTCTCCACCGATTACTTGGGTTTTGCCATTTATGCTGTATTTTTCGGTGTGGCATTCGGCTGGCTCAGTTCTGTGCTGTTTGAGACTCTCATGGACCTGGTGGGCGCTCAGAGATTCTCTAGTGCTGTCGGGTTGGTCACTATCGTGGAGTGTGGACCTGTGCTGCTGGGGCCGCCGTTACTGGGAAAACTCAATGATATCTACCATGATTATAAATACACATATCAGGGTTGTGGAATCGTCCTGGTGGTCGCCAGCGTATTCCTGTTTGTGGGAATGGGAATCAACTACCGGCTGTTGGAAAAAGAGAAGAGGGAGGAGGAGAAAATAGCTAGGCAGGAAGAAAAGGATGAAGAGACAAATATAGACAATGCCCTGAACGAGAAGGCAAAGGAGGCGGATGGAGACGCA

Function


GO:

id name namespace
GO:0015718 monocarboxylic acid transport biological_process

KEGG:

id description
K08179 SLC16A1; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU253359 lncRNA upstream 17387 684545 ~ 684768 (+) True G223355
TU253357 lncRNA upstream 18062 683838 ~ 684093 (+) True G223353
TU253356 lncRNA upstream 19741 682187 ~ 682414 (+) True G223352
TU253306 lncRNA upstream 105474 596469 ~ 596681 (+) True G223304
TU253300 lncRNA upstream 120984 580900 ~ 581171 (+) True G223298
TU253345 lncRNA downstream 6801 718697 ~ 770512 (+) True G223341
TU253346 lncRNA downstream 22925 734821 ~ 736765 (+) True G223342
TU253380 lncRNA downstream 63946 775842 ~ 776081 (+) True G223376
TU253295 lncRNA downstream 99436 811332 ~ 813564 (+) True G223293
TU253390 lncRNA downstream 209055 920951 ~ 921183 (+) True G223386
CI01000052_00496215_00499293.mRNA mRNA upstream 202431 496215 ~ 499724 (+) True CI01000052_00496215_00499293
CI01000052_00437783_00438718.mRNA mRNA upstream 263406 437278 ~ 438749 (+) True CI01000052_00437783_00438718
CI01000052_00430871_00437100.mRNA mRNA upstream 265033 429733 ~ 437122 (+) True CI01000052_00430871_00437100
CI01000052_00294399_00296217.mRNA mRNA upstream 405349 294130 ~ 296806 (+) True CI01000052_00294399_00296217
CI01000052_00165058_00166912.mRNA mRNA upstream 535220 165058 ~ 166935 (+) True CI01000052_00165058_00166912
CI01000052_00714377_00725358.mRNA mRNA downstream 2481 714377 ~ 725389 (+) True CI01000052_00714377_00725358
CI01000052_00793472_00831585.mRNA mRNA downstream 81576 793472 ~ 831953 (+) False CI01000052_00793472_00831585
CI01000052_00836931_00841228.mRNA mRNA downstream 123472 835368 ~ 841433 (+) True CI01000052_00836931_00841228
CI01000052_00906265_00916799.mRNA mRNA downstream 192660 904556 ~ 916813 (+) True CI01000052_00906265_00916799
CI01000052_01044855_01046432.mRNA mRNA downstream 332959 1044855 ~ 1046617 (+) True CI01000052_01044855_01046432
TU253572 other downstream 558596 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 1337430 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 1386644 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 2719240 3431136 ~ 3460136 (+) True G224953

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071302 True 1399 mRNA 0.51 4 NC_007119.7 26924217 ~ 26937225 (-)