RNA id: TCONS_00071302


Basic Information

Item Value
RNA id TCONS_00071302
length 1399
RNA type mRNA
GC content 0.51
exon number 4
gene id XLOC_036490
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 26923613 ~ 26961779 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCTCCAGCAACAGGAGGTCCAGTGGGCTACACTCCTCCAGAGGGCGGCTGGGGCTGGGCAGTGGTGGTCGGAGCCTTTATCAGCATCGGCTTCTCTTATGCCTTCCCAAAATCCATCACGGTGTTCTTCAAGGAGATTGAGGTCATATTTAATGCCACCAGCAGCCAGGTGTCATGGATCTCCTCAATCATGCTGGCTGTCATGTATGCTGGAGGACCAATCAGCAGTATTCTTGTGAATAAGTTTGGTAGTCGGCCAATCATGATCGCTGGAGGATGTCTGTCAGGCACGGGATTAGTTGCTGCATCCTTCTGTGACACAGTGGAGGGGCTGTACTTCTGTGTGGGAGTCATAGGCGGACTTGGTTTGGCTTTCAATCTGAATCCGGCATTAACCATGATTGGCAAATACTTCTACAAGCGTCGGCCAATCGCTAACGGCATCGCCATGGCAGGAAGCCCAGTGTTCTTGTCGACTCTGGCCCCGTTGAACAGCTGGCTGTTTGATCAGTTCGGGTGGAGAGGCAGTTTCCTCATCCTAGGCGGAGCTCTGCTCAACTGCTGCGTCGCTGGATCATTAATGCGGCCCATTGGACCAAAACCACAACCAGCCATACCCAAAGAGGATGCTGAAATCAAACCACAAGAGAAAAAAACCGTGATGCAGACCATAAACGGCTTCCTGGATCTGACCCTCTTCACCCACCGAGGCTTCTTGCTGTACTTGCTAGGAAACGTCATCATGTTTTTTGGCCTCTTCGCGCCTCTTGTGTTCCTCAGTAATTACGCAAAAAGCAAACATATCTCCAAAGACAAGGCTGCATTCTTGTTGTCCATCTTGGCTTTCACAGACATGATCGCTCGGCCGTCTATGGGTCTGGTGGCAAACACACGGTGGGTTCGTCCGCGTATCCAATACTTTTTCGCTGCGTCTGTGCTGTATAATGGCGTCTGCCACTTGTTGGCGCCACTCTCCACCGATTACTTGGGCTTTGCCATTTATGCAGTGTTTTTCGGAGTGGCGTTCGGCTGGCTCAGTTCTGTGCTTTTCGAGACGCTCATGGATCTTGTAGGAGCTCAGAGGTTCTCCAGTGCTGTTGGGTTGGTCACCATTGTGGAATGTGCGCCTGTGCTGCTCGGGCCGCCACTGCTGGGACGACTCAACGATATCTATGATGACTATAAGTACACATATCAGGGCTGTGGAATCGTTCTGGTGATTGCCAGCATCTTCCTGTTTGTGGGAATGGGTATTAACTACCGACTGGTAGACAAGGAGAAGAAAGAGGAAGAGAAAAGAGCCAAACTGGAAGACAAAGACGAGGAGACCAATTTAGACAATGCCCTAAACGAGAAGGAAAAGGAGGCAGATGGAGTCGTATAGGATGTGTGAGCCG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0008028 monocarboxylic acid transmembrane transporter activity molecular_function
GO:0015129 lactate transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030515-5 Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including central nervous system; digestive system; liver primordium; musculature system; and neural tube. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 7. Orthologous to human SLC16A1 (solute carrier family 16 member 1).

Ensembl:

ensembl_id ENSDART00000191787

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071299 lncRNA downstream 200889 26722642 ~ 26723328 (-) True XLOC_036488
TCONS_00072469 lncRNA downstream 223882 26685829 ~ 26700335 (-) True XLOC_036486
TCONS_00071292 lncRNA downstream 537581 26386032 ~ 26386636 (-) True XLOC_036484
TCONS_00071290 lncRNA downstream 555851 26329253 ~ 26368366 (-) True XLOC_036483
TCONS_00072468 lncRNA downstream 593571 26329253 ~ 26330646 (-) False XLOC_036483
TCONS_00072470 lncRNA upstream 30211 26967436 ~ 26971126 (-) True XLOC_036491
TCONS_00071303 lncRNA upstream 40204 26977429 ~ 26979079 (-) True XLOC_036492
TCONS_00072045 lncRNA upstream 234483 27171708 ~ 27222033 (-) True XLOC_036493
TCONS_00071304 lncRNA upstream 246049 27183274 ~ 27186403 (-) False XLOC_036494
TCONS_00071305 lncRNA upstream 246049 27183274 ~ 27201164 (-) False XLOC_036494
TCONS_00071300 mRNA downstream 5701 26902358 ~ 26918516 (-) True XLOC_036489
TCONS_00071298 mRNA downstream 131305 26714532 ~ 26792912 (-) False XLOC_036488
TCONS_00071294 mRNA downstream 214258 26701038 ~ 26709959 (-) False XLOC_036487
TCONS_00071313 mRNA upstream 424462 27361687 ~ 27515540 (-) False XLOC_036496
TCONS_00071316 mRNA upstream 693467 27630692 ~ 27656765 (-) True XLOC_036499
TCONS_00071317 mRNA upstream 722019 27659244 ~ 27687095 (-) True XLOC_036500
TCONS_00071319 mRNA upstream 885787 27823012 ~ 27858458 (-) False XLOC_036502
TCONS_00071321 mRNA upstream 886076 27823301 ~ 27849770 (-) False XLOC_036502
TCONS_00071296 other downstream 216858 26702217 ~ 26707359 (-) False XLOC_036487
TCONS_00071284 other downstream 1078029 25818622 ~ 25846188 (-) False XLOC_036477
TCONS_00071280 other downstream 1163179 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071278 other downstream 1168919 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071268 other downstream 1258456 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071308 other upstream 266101 27203326 ~ 27206090 (-) False XLOC_036495
TCONS_00071309 other upstream 266106 27203331 ~ 27206934 (-) False XLOC_036495
TCONS_00071310 other upstream 266148 27203373 ~ 27205479 (-) False XLOC_036495
TCONS_00071311 other upstream 268021 27205246 ~ 27206559 (-) False XLOC_036495
TCONS_00071312 other upstream 268067 27205292 ~ 27206922 (-) True XLOC_036495

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000052_00702155_00711896.mRNA True 1383 mRNA 0.51 4 CI01000052 702155 ~ 711896 (+)