RNA id: TCONS_00071316


Basic Information

Item Value
RNA id TCONS_00071316
length 3131
RNA type mRNA
GC content 0.46
exon number 22
gene id XLOC_036499
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 27630692 ~ 27656765 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCGCTCGATCATATGAGAGCGTGCGGTTATCGTTCAATCCGTTTCTGCGATAGACAGATTCAATAGGAGCTTTCAGACAGTATGAGCAGAAGAAACAGGAATAATTACCTTTCTATAGCCGCTGTGCGGACAATTGGATTGGATTTTATAGAGATGCTGGAGGAAACAAACAGGAGATCCATTTCGGACAGAAATACTCTGACAGATATCTACAACACAGAGTTTCGAGATAGGGACGGTGGAGTTAAAGATCCAAActtctctcgagtcctctatgcGTTGAGAAACGCCAATAAAGCGCGCCTCTCAAGAACAGGTCGTGTTTACTTCAATACTAATGTAAGAACGGGGCTGCACGATCAATGGTTTCGGCCACGTCGAAGACAACAGAACCAAGCTAACGCAACTCCAGGTAATGTTAGCTCAGTGACGCCTTCTAGTGATCAGGGGCCCTCTTGCCCAGAGAGTGGAGTCAGAGCAAGGAGAAAACTGGTAAAATACATCCTACAGCGACTCAACACTACAGACAGGTCTCATTTTATAGCTGATAAGTGGGGTGTGCGGGTGTCCTCTGAGCTCTATATAGAAGATGGAAAGATTCGGATCAGTGTGGATGAAGCAGAAGTTTATGAGTTGAAGCTGTTTGTTGAGAACACTGGTCAGGAAGCTGTATATTTCACATACTACACTGCTCTTTGCTGGCTGCAGTATTTTACTCTGGAAGACAGTCGGAAAGTCACACGCAACAATCCACTCCGTCTGGAGCCACGTGAGAAGTATGAGGTGATTGTGAGATTCAAATCCAGTCATGTTGGAGTTTATTCGGCTACTCTGGCATTTGAGTTTAAGAAGAACACCCAGCCCACCACACGTTCCTTCCACATTGTGCGCTTCATTGAGGCTGAATACAGGAGTAAACTTGCAGCCCTGCTGGGTCCTACAGAGCCATACAAGCCCCTGAGACTCAACATCTCTGAACCCGAAAACTGCATAATAGATGAGGGTTTTCCACCTGATGGTTATCTTCAGAACTTTCTTGTAAATGTTCTGCCCTTGGGGAAATACATTCCTCCTCCTGACACCACTATACTGGCCGAACTCCTGAAAGAGGACTGTTCTTCTCGGATCTTCAGGGGGAAACTTAAGGATCTTCAGTCACTTTTGCAGAGTCCGCTGACCTTCGACAATTATGCAGAACGCTTTGATTTACTGCTGTATCTGGAAGAGTGTCAGATGCACGTGGATATCAAGAGATACAATAAAGACAGTGTCACCTTACATAGGGACCGTGACAAAAGACTGATGGGTTTAAATCTCCCTGGTGTCTCAGAGAACAGGCCTTCAGTCCTGAGAGGAGATCACCTGCTTCTTACTAAAAGCGAGGAGGTCACTTTTTCAAATGTGACCAAATACAAGGGCTACGTCCACAGAGTGGAACTGGATCAGGTCAAACTGGGCCTCTCCAAAAGGTTCCTTAAAGATGTATACATTGATAAGATGAAATTCCGTGTCGAGTTCACAGTCAATCGTATTCCGGTAAGATTACAACACAGAGCGGTTCATATGGCGGTCCAGCACAACCTCAAGGATGTGCTGTTCCCTATGGCCTCAAGAAGTCTGAATCCTGTGTCTCCACCTGCTCTGAGgCTCTTTGATCGAAAGCTTGAGTACAACTTTCAACAGTACAGTGCAGTGTGTAACATTGTGGCCGGTACTTCCAAACCTGCACCGTATCTGGTGTTTGGACCTCCTGGCACTGGTAAAACCGTCACGATAGTGGAGGCTATCAAACAGGTGGAAAAGAATATCCCAGATGCCTATATTCTAGCTTGTGCTCCATCTAACAGCGCCGCTGATCAACTGTGTGAAAAGTTGATCACTAGTGAACATGTTGATGCGCACAAAATATACAGACTCTACGCAAGCTCACGAAATCAAAAAGACATTCCTAAAATCCTAAAGGACAACTGCAATGTGGATGAAGAGATGATTGATTTCCCATGTAAAGAGGATCTAATGTCCTACAAGATCCTCATCTGCACTCTGGTCACTGCAGGCAGGCTGGTCACTGGGGGATTTTCTGAGGATCATTTTACTCACAACTTTGTGGATGAAGCTGGACATGCTGTGGAGTCAGAGACCATCATCAGTGTGGCAGGATTGTTGAATGCAGAGAAGGGACAGCTTGTTTTGGCTGGGGATCCTAAACAGCTGGGGCCAATCCTGAGATCCCCACTTGCCATTAATCATGGACTTGATGTCTCTTTGTTAGAGAGGCTGATGACACAGAATGATCTTTATAAGAGAGGTGACGTGGAATTCGACAACCGCTACGTCAGCAAACTTATTATGAATTACAGGTCTCACCCATACATTTTGGAGGTTCCTAATAGGTTGTTCTATGATGGGGAACTGAAAGCATGTGCCGATGAGATCAGCTCTAATCAATACTGCATGTGGGAGCACTTGCCTTCAAAGGGATTCCCTGTGATTTTCCATGGAGTTCCTGGAAAGGATGAGCGAGAGTCAAACAGTCCTTCTTTCTTTAACATCTATGAAATCAACATCCTTGTTGACTACTTGAAGAAGCTGCTTCTGACACAGCCCAAGAAGGGAATCTCAAGAATCTTCCCCAAAGACATTGGCATCATCGCCCCCTACCGGAAACAGGTGGAGAAGATCAAACGAGCCATCGATGCAGACAAGGACTTCCAAGATTACATGGGCATTGACAACCTGAAAGTCGGTTCTGTGGAGGAGTTTCAGGGCCAAGAGAGGAAAGTGATCATGGTGTCGACTGTTCGCAGCAGTGTAAAATACATCAGTTTGGATGAAACATTCAACATTGGGTTTCTCAAAAATGAAAAGAGATTCAATGTGGCGGTGACAAGGGCAAAATCGTTGTTAATCATGGTGGGAAACCCCATGATTCTGCGGACAGATGAAAGCTGGGGCCGGTTTATTGACTTCTGCTTGGAGCGGGGTGGTTACACTGGGATTTCCATTACCAGCGTTGAGAGAATAGATGATGTTGAAAGTCGTCTTCTTGCTCTTAACATCCAGGACGAGGAAACCGAGGAGAGTCCAGTCCAGCGGTATGTGGATCCCGAGTTTAGGAATGATTACTAA

Function

GO:

id name namespace
GO:0035279 mRNA cleavage involved in gene silencing by miRNA biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0035194 post-transcriptional gene silencing by RNA biological_process
GO:0005829 cytosol cellular_component
GO:0000932 P-body cellular_component
GO:0043186 P granule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0032574 5'-3' RNA helicase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-371 Predicted to enable RNA binding activity. Predicted to be involved in mRNA cleavage involved in gene silencing by miRNA. Predicted to act upstream of or within gene silencing by RNA. Predicted to be located in P-body. Predicted to be active in P granule and cytosol. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human MOV10 (Mov10 RISC complex RNA helicase).

Ensembl:

ensembl_id ENSDART00000078491

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072063 lncRNA downstream 56609 27551556 ~ 27574083 (-) False XLOC_036497
TCONS_00072064 lncRNA downstream 56649 27572547 ~ 27574043 (-) True XLOC_036497
TCONS_00072474 lncRNA downstream 77551 27551556 ~ 27553141 (-) False XLOC_036497
TCONS_00072062 lncRNA downstream 78345 27551224 ~ 27552347 (-) False XLOC_036497
TCONS_00071314 lncRNA downstream 115520 27482044 ~ 27515172 (-) True XLOC_036496
TCONS_00072475 lncRNA upstream 512372 28169137 ~ 28228356 (-) False XLOC_036503
TCONS_00071324 lncRNA upstream 550589 28207354 ~ 28228263 (-) False XLOC_036503
TCONS_00071325 lncRNA upstream 566887 28223652 ~ 28228345 (-) True XLOC_036503
TCONS_00072476 lncRNA upstream 805739 28462504 ~ 28465453 (-) True XLOC_036513
TCONS_00072477 lncRNA upstream 871564 28528329 ~ 28546676 (-) True XLOC_036514
TCONS_00071313 mRNA downstream 115152 27361687 ~ 27515540 (-) False XLOC_036496
TCONS_00071301 mRNA downstream 668913 26923613 ~ 26961779 (-) False XLOC_036490
TCONS_00071302 mRNA downstream 693467 26924217 ~ 26937225 (-) True XLOC_036490
TCONS_00071300 mRNA downstream 712176 26902358 ~ 26918516 (-) True XLOC_036489
TCONS_00071298 mRNA downstream 837780 26714532 ~ 26792912 (-) False XLOC_036488
TCONS_00071317 mRNA upstream 2479 27659244 ~ 27687095 (-) True XLOC_036500
TCONS_00071319 mRNA upstream 166247 27823012 ~ 27858458 (-) False XLOC_036502
TCONS_00071321 mRNA upstream 166536 27823301 ~ 27849770 (-) False XLOC_036502
TCONS_00071320 mRNA upstream 166536 27823301 ~ 27849770 (-) False XLOC_036502
TCONS_00071323 mRNA upstream 167551 27824316 ~ 27858465 (-) True XLOC_036502
TCONS_00071315 other downstream 23739 27596435 ~ 27606953 (-) True XLOC_036498
TCONS_00071309 other downstream 423758 27203331 ~ 27206934 (-) False XLOC_036495
TCONS_00071312 other downstream 423770 27205292 ~ 27206922 (-) True XLOC_036495
TCONS_00071311 other downstream 424133 27205246 ~ 27206559 (-) False XLOC_036495
TCONS_00071308 other downstream 424602 27203326 ~ 27206090 (-) False XLOC_036495
TCONS_00071318 other upstream 71205 27727970 ~ 27728086 (-) True XLOC_036501
TCONS_00071322 other upstream 166616 27823381 ~ 27825177 (-) False XLOC_036502
TCONS_00071329 other upstream 597073 28253838 ~ 28255641 (-) False XLOC_036504
TCONS_00071333 other upstream 637711 28294476 ~ 28295796 (-) True XLOC_036506
TCONS_00071349 other upstream 2031746 29688511 ~ 29698282 (-) True XLOC_036520

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000347_00105272_00119298.mRNA True 3309 mRNA 0.45 21 CI01000347 104917 ~ 119298 (-)