RNA id: TCONS_00071323


Basic Information

Item Value
RNA id TCONS_00071323
length 849
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_036502
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 27823012 ~ 27858465 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCCATATATTTTCGGCCGGGACAGGACAGCAGCAGCTCGGGCAGCAGAGAAAGTGAGAAATAACTCCGTAAACTGGGATATTTGTGATTGCGAGGGCCGATGAGCGAACAAAATCATATATGAagggcaGCAGGATGAATGTGGAGACTCTCAGTAAAGCTGAACTTCTGATGCTGCTCAGCATTCTGGAAGGAGAACTGGAAGCGCAGGATGTGGTCATACACACACTCAGGGCACAACAGAGAAACACATTTGTACAGGAGCGATATGGACAGTATGACCTCAGCGACCCGTTTGTAGCACTGCTGAGGGACAGCGAGCTGTCGCAGGCTCAGGATGATGGAAGGCAGAGTCCTGTGTGTCTGAATCCGCTGGGTGTGTTGAAGCTGGTAATGGCCCACTGCACCAACATGAAGGAGAAACTGTTAAAACAGCTCGCTGCTGCAGAGAGGAGACACAGACGGGTAATAGCTGACTTAGAAGAAGAGAAACGAAGACGTGCTCAAGACGCCGCTGCTGGTGATGACATAACTGACATGCTAGAAAGGGAACGAGACAGACTATTGCAGCAGTTGGAGTCTGAGAGGGCTCAGCTTGAGCGACTGGAACGTGAGCGGTCAGTCCTGTCGAGTCAAGCTGTGGAAGATTTAGCAGAGCAACAGCAGTTATCCTCAACCCTAGCTAAAGAATGTCAGAAGGCTACAGCCCGCGCTGAGGAGGAGAGCCAGCGTGTGGCAGAGCTCAGCCGCCAGCTGGAACAAGAAAGCAGAGCTATGGAAAGCCTAAAGGGGGAGCTAGAGAGCGAACGCACTCGGGCTCAGCAGATAGAGGCGAGAACTGAGCGAAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-65 Orthologous to human CTTNBP2NL (CTTNBP2 N-terminal like).

Ensembl:

ensembl_id ENSDART00000136562

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072063 lncRNA downstream 250233 27551556 ~ 27574083 (-) False XLOC_036497
TCONS_00072064 lncRNA downstream 250273 27572547 ~ 27574043 (-) True XLOC_036497
TCONS_00072474 lncRNA downstream 271175 27551556 ~ 27553141 (-) False XLOC_036497
TCONS_00072062 lncRNA downstream 271969 27551224 ~ 27552347 (-) False XLOC_036497
TCONS_00071314 lncRNA downstream 309144 27482044 ~ 27515172 (-) True XLOC_036496
TCONS_00072475 lncRNA upstream 310672 28169137 ~ 28228356 (-) False XLOC_036503
TCONS_00071324 lncRNA upstream 348889 28207354 ~ 28228263 (-) False XLOC_036503
TCONS_00071325 lncRNA upstream 365187 28223652 ~ 28228345 (-) True XLOC_036503
TCONS_00072476 lncRNA upstream 604039 28462504 ~ 28465453 (-) True XLOC_036513
TCONS_00072477 lncRNA upstream 669864 28528329 ~ 28546676 (-) True XLOC_036514
TCONS_00071317 mRNA downstream 137221 27659244 ~ 27687095 (-) True XLOC_036500
TCONS_00071316 mRNA downstream 167551 27630692 ~ 27656765 (-) True XLOC_036499
TCONS_00071313 mRNA downstream 308776 27361687 ~ 27515540 (-) False XLOC_036496
TCONS_00071301 mRNA downstream 862537 26923613 ~ 26961779 (-) False XLOC_036490
TCONS_00071326 mRNA upstream 382635 28241100 ~ 28256888 (-) False XLOC_036504
TCONS_00071328 mRNA upstream 384761 28243226 ~ 28259766 (-) False XLOC_036504
TCONS_00071327 mRNA upstream 384761 28243226 ~ 28259766 (-) False XLOC_036504
TCONS_00071330 mRNA upstream 397813 28256278 ~ 28259779 (-) True XLOC_036504
TCONS_00071331 mRNA upstream 409081 28267546 ~ 28274251 (-) False XLOC_036505
TCONS_00071318 other downstream 96230 27727970 ~ 27728086 (-) True XLOC_036501
TCONS_00071315 other downstream 217363 27596435 ~ 27606953 (-) True XLOC_036498
TCONS_00071312 other downstream 617394 27205292 ~ 27206922 (-) True XLOC_036495
TCONS_00071311 other downstream 617757 27205246 ~ 27206559 (-) False XLOC_036495
TCONS_00071310 other downstream 618837 27203373 ~ 27205479 (-) False XLOC_036495
TCONS_00071329 other upstream 395373 28253838 ~ 28255641 (-) False XLOC_036504
TCONS_00071333 other upstream 436011 28294476 ~ 28295796 (-) True XLOC_036506
TCONS_00071349 other upstream 1830046 29688511 ~ 29698282 (-) True XLOC_036520
TCONS_00071360 other upstream 2304027 30162492 ~ 30162633 (-) True XLOC_036529
TCONS_00071361 other upstream 2308970 30167435 ~ 30167525 (-) True XLOC_036530

Expression Profile

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