RNA id: TU253357


Basic Information

Item Value
RNA id TU253357
length 256
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G223353
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 683838 ~ 684093 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTTGGAAGAAAGTAAGTGAGGAGGTCGGACAATCTGGTAAGTTGTAAAAAACGCTTATTACTCAATTTGAGCTATATATATATATATATATATATATATACATATTGAGACTACAAGCTAGCTAAAGCCGGCAAATTGAGCTTATTCGCCGTATTTTACAACTACTTTCCCACTGACGAGTTGATGTGTTTATTCAGAGGAAGTGTGCAGAAACGAGACTCGAGCCGCCTGGCAGAAGCCCCTCTCATGACGCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253356 lncRNA upstream 1424 682187 ~ 682414 (+) True G223352
TU253306 lncRNA upstream 87157 596469 ~ 596681 (+) True G223304
TU253300 lncRNA upstream 102667 580900 ~ 581171 (+) True G223298
TU253268 lncRNA upstream 134054 549457 ~ 549784 (+) True G223274
TU253258 lncRNA upstream 150538 532988 ~ 533300 (+) True G223264
TU253359 lncRNA downstream 452 684545 ~ 684768 (+) True G223355
TU253345 lncRNA downstream 34604 718697 ~ 770512 (+) True G223341
TU253346 lncRNA downstream 50728 734821 ~ 736765 (+) True G223342
TU253380 lncRNA downstream 91749 775842 ~ 776081 (+) True G223376
TU253295 lncRNA downstream 127239 811332 ~ 813564 (+) True G223293
CI01000052_00496215_00499293.mRNA mRNA upstream 184114 496215 ~ 499724 (+) True CI01000052_00496215_00499293
CI01000052_00437783_00438718.mRNA mRNA upstream 245089 437278 ~ 438749 (+) True CI01000052_00437783_00438718
CI01000052_00430871_00437100.mRNA mRNA upstream 246716 429733 ~ 437122 (+) True CI01000052_00430871_00437100
CI01000052_00294399_00296217.mRNA mRNA upstream 387032 294130 ~ 296806 (+) True CI01000052_00294399_00296217
CI01000052_00165058_00166912.mRNA mRNA upstream 516903 165058 ~ 166935 (+) True CI01000052_00165058_00166912
CI01000052_00702155_00711896.mRNA mRNA downstream 18062 702155 ~ 711896 (+) True CI01000052_00702155_00711896
CI01000052_00714377_00725358.mRNA mRNA downstream 30284 714377 ~ 725389 (+) True CI01000052_00714377_00725358
CI01000052_00793472_00831585.mRNA mRNA downstream 109379 793472 ~ 831953 (+) False CI01000052_00793472_00831585
CI01000052_00836931_00841228.mRNA mRNA downstream 151275 835368 ~ 841433 (+) True CI01000052_00836931_00841228
CI01000052_00906265_00916799.mRNA mRNA downstream 220463 904556 ~ 916813 (+) True CI01000052_00906265_00916799
TU253572 other downstream 586399 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 1365233 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 1414447 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 2747043 3431136 ~ 3460136 (+) True G224953

Expression Profile