RNA id: CI01000052_00294399_00296217.mRNA



Basic Information


Item Value
RNA id CI01000052_00294399_00296217.mRNA
length 1803
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000052_00294399_00296217
representative True

Chromosome Information


Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 294130 ~ 296806 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATTTATTGACAGGAAAATGCTGTACAATAACTTCACTCCAAGGGTCAGTATGAACCGTGACAGACAGACATTGCGTACCTGTATGTTGCTTTGCATAAAATAAAATGATTTACAGCACAGCGAATAAATCGCGCTATTCGCGCGTAGTTGGATGCTTGAACATTTTGAGTTTACTCGCTTCATTCGCAAGTGAAATTCACTTCACAACAGACGCGAATTCGCGTCATGGGAGGGGCTTCTGCCAGGCGGCTCCAGTCTCGTTGCGAAATGGCTGACATGGATTTTGTTGAGAGGGTAGCTACGCTTTATGTGCTATGGAAGGCTGAAAAATGGCATAGACTTATTCGGTGCCGTGTCTGGGTCCATCAGATCCTTCAGAGGCGCACCCAGCTTGGTGAGTTTCACCAACTCCTCCAGGAGCTGCGCCTGGATGACGGCCACTTTCAGCGGTACTTCCGACTGAGCCGGTCCCAGTTTGATGACCTGTTGTCCCGTGTCAGGGAGGATTTCCCTCCAGGACACCAACTACAGGCGGTGTATTCCACCTGCAGAGCGCCTGTTCATCTGTCTCCGATGAAAGGAGGTCCATTGCAGAGCGAGGAGAGGTGGAACTTCCTGCTCTGCTGTGGAGCACTGGACGGCAAGCACGTCCTGATAAAGGCACCCCCCAACACCGGATCCCAGTTCCACAACTACAATGGAACTTTTTCCTTAGTTCACCTTGCTGTTGTGGATGTAAGGTATTGCTTCCGGGTTATTGATGTCGGGGGATATGGGCGGACGAGCGATGGTGGGACTCTGGCCAACTCAGCCTTTGGCCAGGCACTCCGTGGTGGCACCCTCCATCTGCCACCTGACCGTCCTCTCCCAGGAGCTGACCACAGAGGACCCCAGCCCCATGTCTTTGTGGCAGATGAGGCCTTTCCCCTCAGGAAAAACCTCATGAGACCATTCCCTGGGCACACCCTTCCCCGAGAGAGACGGGTCTTTAATTACCGTCTCTTCAGAGCCCGGCTGATTATCCACAACTTTATGAGGAGATCTGCAGAGGCACCTGCTGTGAGGGGGGCGGTGCAAGGTGCAGAGGACTCGCTGCAGAGTCTCGGTCGGGTTGCAGCCAATAATTCTGCCAGAGAGGCCATCCGGGTCAGGGACAGCTTCATGGCTCACTTTTCAGCCGAGGGAGCAGTCCCGTGGCAACCGACTGAATAGATTTTGTTTATTATATCCTGTGCTGTTTATGTCCTTTATGTTTAGCTTGTGTAAATATTTCCATCCTTTTGTCTTTTCTTTTGATGTACACCCTTTATATCTTGTAAATAATCACATCTTTTCAACCTCTCTTGTAAATATTGCTATCTTTTTTCATCCTTAACTCTTGTAAATTTTCATCATTTTTCAATCATTTTTTGTTCAAGTTTAGATTGTTATAGTTTTCTTGTTTTCAAATGATAAATGGAGCCAGCCTCCAAAAGGAATCCCTGTCTCGTTGCTGCATTCTCATTACACTATACCACAACACTGGTTCAATCACAAATAACTATTTTTTACTATACTAGTGTATTTGCAATAGGATATAATAAGAATGAATGTACAAATATTTACCATAAGTATTCTAGTCTTAACATAGAAATAATATTTTTATGTAACAAATATAAATTATGATTTACTATGTTGTGCACAAAGTAGCACACCAAAACTTTTGGTCATTGTATAGAACATTTATTTATACAAAATAAATCAAATAAAAAAAATATAAAAACTATATACAAAGAACATTTACAACTATTTACAAGCAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU252816 lncRNA upstream 111965 177239 ~ 182165 (+) True G222882
TU252812 lncRNA upstream 140728 153017 ~ 153402 (+) True G222878
TU252804 lncRNA upstream 164359 129515 ~ 129771 (+) True G222870
TU252803 lncRNA upstream 165974 127901 ~ 128156 (+) True G222869
TU252800 lncRNA upstream 174762 119004 ~ 119368 (+) True G222866
TU252842 lncRNA downstream 27298 324104 ~ 328614 (+) True G222906
TU252920 lncRNA downstream 36322 333128 ~ 333361 (+) True G222964
TU252933 lncRNA downstream 47733 344539 ~ 344755 (+) True G222977
TU252938 lncRNA downstream 52721 349527 ~ 349820 (+) True G222982
TU252942 lncRNA downstream 56026 352832 ~ 353070 (+) True G222986
CI01000052_00165058_00166912.mRNA mRNA upstream 127195 165058 ~ 166935 (+) True CI01000052_00165058_00166912
CI01000052_00061936_00072645.mRNA mRNA upstream 221464 60529 ~ 72666 (+) True CI01000052_00061936_00072645
CI01000052_00045445_00045867.mRNA mRNA upstream 248135 45318 ~ 45995 (+) False CI01000052_00045445_00045867
CI01000052_00430871_00437100.mRNA mRNA downstream 132927 429733 ~ 437122 (+) True CI01000052_00430871_00437100
CI01000052_00437783_00438718.mRNA mRNA downstream 140472 437278 ~ 438749 (+) True CI01000052_00437783_00438718
CI01000052_00496215_00499293.mRNA mRNA downstream 199409 496215 ~ 499724 (+) True CI01000052_00496215_00499293
CI01000052_00702155_00711896.mRNA mRNA downstream 405349 702155 ~ 711896 (+) True CI01000052_00702155_00711896
CI01000052_00714377_00725358.mRNA mRNA downstream 417571 714377 ~ 725389 (+) True CI01000052_00714377_00725358
TU253572 other downstream 973686 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 1752520 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 1801734 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 3134330 3431136 ~ 3460136 (+) True G224953

Expression Profile