CI01000052_00045445_00045867


Basic Information

Item Value
gene id CI01000052_00045445_00045867
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 45170 ~ 45995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000052_00045445_00045867.mRNA
GTATTAATACTCTTTTCAGCAATGTTAAGACTACATCTCTTAAAGCAGAGCTCTCTGGCTATCATTTCAGTAATATTTAATTTACTGGCAATGCATACATTAATCATTGCATTTGTCTGTTTCAAAGATGTCAGAGAAAAAGCAAAAGAGTATTATTTCATTCTGGGCACTAAAGGGTCAGCCCCCTAAAAAGGTTGCTAGATCAGAGGAGGAGACAGTGGAAGAGGTGAAGGCAGAGACGGTGGAGAAGATAGTTAGAGTGACAGTTGGAGAGAAAGTAGAAGAGACCATAGAGGAGACAGTGGACAAGACAGGGAAGAAGAAGAAAGCATTAAGTGGAGCAGCCACCAGGTGTACTTTAAAAAGTGAGTGGTCAACCAAATGGCCATTCATTACCATAGGCACCAGCAGCTCCTACAACTGGTGCTCTGTTTGCAGACAGGAGAACTCAGGTGTGAACAGGCATATAAAACATAAAGGTCATCAGGCCAAAGAACAGGCACTTCAGTCAACAAGCAGCATAATTTCTATTTGTGCTGGTCAATTATGAACAACACTGTAGGTAAAATTAAACTGCTAGCAAAAACTTGAGAGAATTTGGTGGGGCAGAGGGGGCCGCTGCTGCAAATATTTAAGTGGCTCCTCCCCTAATAGATGTAATCTCACTCCAAACTTTTA
>TU252766
GAGCTGATGTTGGGGAATATAGCCAAATTCATGCTAAATTATTATTGATGCAGTCAAAAACTCTCCCAACTGCTTTAGCTTAGTTTGGCTATCTGAAACTAAGGAAAGTACTAGAGATGTATTTCATTATTTTATTTCAAATTCTACTGTATTAATACTCTTTTCAGCAATGTTAAGACTACATCTCTTAAAGCAGAGCTCTCTGGCTATCATTTCAGTAATATTTAATTTACTGGCAATGCATACATTAATCATTGCATTTGTCTGTTTCAAAGATGTCAGAGA
>TU252767
TGGACAAGACAGGGAAGAAGAAGAAAGCATTAAGTGGAGCAGCCACCAGGTGTACTTTAAAAAGTGAGTGGTCAACCAAATGGCCATTCATTACCATAGGCACCAGCAGCTCCTACAACTGGTGCTCTGTTTGCAGACAGGAGAACTCAGGTGTGAACAGGCATATAAAACATAAAGGTCATCAGGCCAAAGAACAGGCACTTCAGTCAACAAGCAGCATAATTTCTATTTGTGCTGGTCAATTATGAACAACACTGTAGGTAAAATTAAACTGCTAGCAAAAACTTGAGAGAATTTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000052_00045445_00045867.mRNA False 678 mRNA 0.42 1 45318 45995
TU252766 False 285 lncRNA 0.32 1 45170 45454
TU252767 True 300 lncRNA 0.42 1 45620 45919

Neighbor

gene id symbol gene type direction distance location
CI01000052_00061936_00072645 NA coding downstream 14534 60529 ~ 72666 (+)
CI01000052_00165058_00166912 NA coding downstream 119063 165058 ~ 166935 (+)
CI01000052_00294399_00296217 NA coding downstream 248135 294130 ~ 296806 (+)
CI01000052_00430871_00437100 NA coding downstream 383738 429733 ~ 437122 (+)
CI01000052_00437783_00438718 NA coding downstream 391283 437278 ~ 438749 (+)
G222838 NA non-coding upstream 14317 30791 ~ 31001 (+)
G222834 NA non-coding upstream 21733 23219 ~ 23585 (+)
G222832 NA non-coding upstream 29996 15065 ~ 15322 (+)
G222843 NA non-coding downstream 8721 54716 ~ 54921 (+)
G222849 NA non-coding downstream 34827 80822 ~ 81062 (+)
G222853 NA non-coding downstream 47876 93871 ~ 107696 (+)
G222866 NA non-coding downstream 73009 119004 ~ 119368 (+)
G222869 NA non-coding downstream 81906 127901 ~ 128156 (+)
G223545 NA other downstream 1224497 1270492 ~ 1270927 (+)
G223694 NA other downstream 2003331 2049326 ~ 2104299 (+)
G224953 NA other downstream 3385141 3431136 ~ 3460136 (+)

Expression


Co-expression Network