RNA id: TU252767


Basic Information

Item Value
RNA id TU252767
length 300
lncRNA type sense_over
GC content 0.42
exon number 1
gene id CI01000052_00045445_00045867
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 45170 ~ 45995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGACAAGACAGGGAAGAAGAAGAAAGCATTAAGTGGAGCAGCCACCAGGTGTACTTTAAAAAGTGAGTGGTCAACCAAATGGCCATTCATTACCATAGGCACCAGCAGCTCCTACAACTGGTGCTCTGTTTGCAGACAGGAGAACTCAGGTGTGAACAGGCATATAAAACATAAAGGTCATCAGGCCAAAGAACAGGCACTTCAGTCAACAAGCAGCATAATTTCTATTTGTGCTGGTCAATTATGAACAACACTGTAGGTAAAATTAAACTGCTAGCAAAAACTTGAGAGAATTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252766 lncRNA upstream 166 45170 ~ 45454 (+) False CI01000052_00045445_00045867
TU252764 lncRNA upstream 14619 30791 ~ 31001 (+) True G222838
TU252760 lncRNA upstream 22035 23219 ~ 23585 (+) True G222834
TU252758 lncRNA upstream 30298 15065 ~ 15322 (+) True G222832
TU252769 lncRNA downstream 8797 54716 ~ 54921 (+) True G222843
TU252775 lncRNA downstream 34903 80822 ~ 81062 (+) True G222849
TU252784 lncRNA downstream 47952 93871 ~ 107696 (+) False G222853
TU252783 lncRNA downstream 59970 105889 ~ 107696 (+) True G222853
TU252800 lncRNA downstream 73085 119004 ~ 119368 (+) True G222866
CI01000052_00061936_00072645.mRNA mRNA downstream 14610 60529 ~ 72666 (+) True CI01000052_00061936_00072645
CI01000052_00165058_00166912.mRNA mRNA downstream 119139 165058 ~ 166935 (+) True CI01000052_00165058_00166912
CI01000052_00294399_00296217.mRNA mRNA downstream 248211 294130 ~ 296806 (+) True CI01000052_00294399_00296217
CI01000052_00430871_00437100.mRNA mRNA downstream 383814 429733 ~ 437122 (+) True CI01000052_00430871_00437100
CI01000052_00437783_00438718.mRNA mRNA downstream 391359 437278 ~ 438749 (+) True CI01000052_00437783_00438718
TU253572 other downstream 1224573 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 2003407 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 2052621 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 3385217 3431136 ~ 3460136 (+) True G224953

Expression Profile