RNA id: CI01000052_00061936_00072645.mRNA



Basic Information


Item Value
RNA id CI01000052_00061936_00072645.mRNA
length 3351
RNA type mRNA
GC content 0.49
exon number 10
gene id CI01000052_00061936_00072645
representative True

Chromosome Information


Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 60529 ~ 72666 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCATTAATGGCATGACCCGGTCAATCTTCTGTCTCATATCTCGTACGTGCTCTATCACTGTTTGGTGTGGGGAGGGCTGGCGTTCCCATGCATCCCAGGCTATGTTGAGGAGTCCTCGTGGTTGCCGCCCAAACAACAACTCAAAGGGTGTAAATCCTGCGAAGGCTTGAGGAACTTCACGGATACCAAAAAGCATGTACGGGATCATGAGGTCCCAGTCCCGTCTGTCCTCAGCTTCCACCCGCCGTAACATCTGCTTTAGAGTTTGGTTGAAATGCTCAACTAGTCCATCCGTTTGGGGGTGGTAGACTGAAGTACGGAGCTGTTTGAATTGCAGCAACTGGCACAGGTCTGCCATGAGCTTGTACATAAACGGGGTGCCCTGGTCAGGATCTCGGCAGGAATGCCAACCCAGCTGAACAGAAGAAACAGTTCCTTGCCAATGGTTTTCGATGTAGCCTTCCGATGGGGTACTGCGTCTGGATATCGGGTCACATAATCCACAATGACAAGTATGTGCTTGTGGCCTCGGGCAGATTTCGGCAGCGGTCCCACCAAGTCCATCCCGATGCGCTCAAAAGACACCTCAATACTAGATAATGGGATAAGTGGGCTGGGGGGAGATTGTTGTGCTGATGTTCTTTGACAAGTTGGGCAGCTTTGGCAGAACCATCCAGGCCAGGCCAATGGAACCGATCTCGAATGCGCTGAATTGTGTTCTTCACCCCCAGGTGCCCTGCCATCGGGTGTGAGTGGGCCAGCTCCAACATGATTTTAGTCATGGACTTCGGCACTACCAACAGGTGTTTCTCCTCCCCCCACCATTGGGCGACCCAGTAAAGCAGGCCATTTTTCACTATGAAGTGTGGGTAGGGATGTGGTGCTGGATGTCGAGCTTCTCCCTCCACCTCCCTGACCTGTGACCAACAATTCCGTAGCCTATTGTCCTCTCGCTGTTCCTGTCCAAACAAGCCCCCTTCAGTGATCTGTTGGAGGAAATCAGCATACAAGTTAGGGGGCGAGTTTTGTGACTCACCATCTCTCTTGCTCTCGGTGGCCTGCAGGACTGGTTGGCTAGCATTCCGATGGTGGGTCTTTTGTTTTCAGTGGCTCCCGTTCCGACTAGCAGGTTGTATGGTGGCTGCTAACAGGTGGTCAAACCCTGGCCAATCCCTTCCAAGCAGCATGGGTACAGGGAGGTCCTTTGCCACTCCTACTTCCACTGACTAGGACTTCGATCCAGCAGAAATGGTGACAGTTTGGGCAGGCACATAACGAGTGTCCCCATGTACGCAGGTGATGGGGATAGATGACTTGCTGTCTTGCCAGGGCTTGATGATTTGAGGTTGTACCAAGCTCACTGAGCGGCCCGAATCCAGAATTGGTTTCACCAGCATTCATTCCGACATGCACTTGCCATTTGGGCGCCTCCAGTGGTATAGCTCATGGACAATGCAGCCTGCTAGCCATACCTTGGTCTTGGGTGGGTTTGGGTCCGTGGGCATGGGTTCATCCCGTGGTCCCGAAGCTGCCGGCCTGCTTATTGGTCTTGAGATGCCCTCCAGTGATGACTCCAGAGTCCCGAGCTTGGGCTGCCTCCACGAGCTCCACTGCCTCTATGAGCTACCTGGCCAGCTGTGGGATTCCCAGAGAGAAGCCAAAGTTGAGCTAATTTTGATAGCTGGGCGGCTTGAACTCGTGCTGGTGCCTGCAAGTCATACATCCATTCATGGAAATGTTGGGCAGCACACACCAGGGAAAGCCCCACTCTTGCCAGAATTTCCTGTTTTAAATCTGCATATGACTCATTTTCAGGGGCCTGGAGTGAATAGTAGGCTCATTGTGCTTCCCCGAGAGCTGTTCCATGAACTGCATTTGGTGGATGCTGACATCAGTAAGCTGGCTGATAATTTCTTCCATTATGAGAGAGAGTGCGGGTTCTGCAGAAAGTCTTGGTCCCAGTCCCAGTCCCAGTCCCAGACGCCTTCTCTGGATCTCACCATCTGTATCTTCGGTTCCCTCTGCCTGGTCTCTCCATCTGCCGGCCATATGAAGAATACCTCAACACCAAGGCCATATTTAAGTCAGATCAGCCTCCAATCTCCCAATTCATTGAATCAAGGATATCACACTACAGCTGCAACCATCCCCAGCAGAGAGCCATTACACACTCAATACTATGATCTAGTGGCAGAAAGACAGTTGAAGTTAAAAAATGACCTAGCAAAGGCAGATAATGTATCAGTGACAGTAGATATATGGTCAGATCGTAGGATGAGAGGCTTTCTAGGAGTCACAGCACACTGGCTCAGTACTGAAGATCACAGTCTGCAGTTAAAATCACAGTTGCTTGCATACAACCGCTTCAAAGGTTCTCATACTGGAGAGAGGATTTGTGAGGAATTTGAGCAGATATGTGAAGAGCTCCAGATCAGGAGAAAGGTTGAACACATCATCTGTGATAACGCGGCAAACATGAGAAAAACATTCAGCACGTTTTCAAGGACAAATAAGGAGCAAGAGATGGTTGAAAAATCTTTTAGCACCAAATCCCAGACAAGGCTCCAGTGTTTTGCTCACACTCTCCAGTTGGTCATAGGAGATGGCCTTAAAGAGACAAAATTAATCAGTGCGGCCCTTGCTAAAACCTCCAGAATGAGTTCCTTACTCCACACAAAAGCCACAGATCTTACACAAGGAGAAAAAAATGTGACCATAAGTGCTGTGGTTCCCTGTGTCCTTTCTCTTAATCACCACCTGGAAAATCAAAAGGAGAAAGTGTGCTACTTGGGCGGTTTGATCTGTAGCTTGCAAACATCCCTCAAAAGAAGATTCAGAGGGATCTTTGTTAATGTAAAGATGGCAGATGGAGAGCGTGATGGGCCATTATTGCCCTTCTCTGACTCTCTATACCTAAAAGCTGCTCTGCTGGATCCTTCATTTGGTACCATGTGGTTGACCCATGATGTCTTGGTCCCTGAAAATATCAAGGAGGCTTTGTCTGCCATGATTAAAGACTTGATTCTCAAGGAGGCATACAGGGCTACCCCGGTCCCTTCCCCCACCCATGAGCAGGAGGATCAAATAACGGTGGCAGAGCCAGAGCATCAGTCTGGACTGTTCACAGCTTACCACAAGAAGCCGAGGAGAGATTCATGTTCCAGTCCCCTTATTCAGCTGAACCACTGTTTGGATATTTGTGACGGACAGAACTCCTTGCAGTTTTGGGCCATGAACAGGCACACCCTTCCCTCTTTGTTCAAGGTAGCGATTTTTATTGTGTTAACAACTCTGCTGTATGTGGACCTTTTCAGTAGAAATGCATATTGAATTTTTTTTTTTTTGTTGCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU252769 lncRNA upstream 5608 54716 ~ 54921 (+) True G222843
TU252767 lncRNA upstream 14610 45620 ~ 45919 (+) True CI01000052_00045445_00045867
TU252766 lncRNA upstream 15075 45170 ~ 45454 (+) False CI01000052_00045445_00045867
TU252764 lncRNA upstream 29528 30791 ~ 31001 (+) True G222838
TU252760 lncRNA upstream 36944 23219 ~ 23585 (+) True G222834
TU252775 lncRNA downstream 8156 80822 ~ 81062 (+) True G222849
TU252784 lncRNA downstream 21205 93871 ~ 107696 (+) False G222853
TU252783 lncRNA downstream 33223 105889 ~ 107696 (+) True G222853
TU252800 lncRNA downstream 46338 119004 ~ 119368 (+) True G222866
TU252803 lncRNA downstream 55235 127901 ~ 128156 (+) True G222869
CI01000052_00045445_00045867.mRNA mRNA upstream 14534 45318 ~ 45995 (+) False CI01000052_00045445_00045867
CI01000052_00165058_00166912.mRNA mRNA downstream 92392 165058 ~ 166935 (+) True CI01000052_00165058_00166912
CI01000052_00294399_00296217.mRNA mRNA downstream 221464 294130 ~ 296806 (+) True CI01000052_00294399_00296217
CI01000052_00430871_00437100.mRNA mRNA downstream 357067 429733 ~ 437122 (+) True CI01000052_00430871_00437100
CI01000052_00437783_00438718.mRNA mRNA downstream 364612 437278 ~ 438749 (+) True CI01000052_00437783_00438718
CI01000052_00496215_00499293.mRNA mRNA downstream 423549 496215 ~ 499724 (+) True CI01000052_00496215_00499293
TU253572 other downstream 1197826 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 1976660 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 2025874 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 3358470 3431136 ~ 3460136 (+) True G224953

Expression Profile