RNA id: TU252938


Basic Information

Item Value
RNA id TU252938
length 294
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G222982
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 349527 ~ 349820 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGTCTTGAGGGACTGTTCAGCAGGCAGCCCCGAAGCATGGCAGAACAACGCAGAGTCTCGTTCCCTGTTCTCAGGGAACCACGGTTACATCTGTAACCTGAGACGTTCCCTTTCAAAAGGGAACTCAACTCTGCGTTTCAGTACGCTATGGGGAACGATATACCCATGCCGCCATGCTTGAGGAGAGTGCATGCCAAGATGGCTAGACAAACGTCCAGCAGTTTCGAGAGAAACGCCAGATAGCAACTCACCCTCGGGTCACACAAAGGCTGTCAGTGACAGCATTCTGGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252933 lncRNA upstream 4772 344539 ~ 344755 (+) True G222977
TU252920 lncRNA upstream 16166 333128 ~ 333361 (+) True G222964
TU252842 lncRNA upstream 20913 324104 ~ 328614 (+) True G222906
TU252844 lncRNA upstream 24790 246602 ~ 324737 (+) False G222906
TU252816 lncRNA upstream 167362 177239 ~ 182165 (+) True G222882
TU252942 lncRNA downstream 3012 352832 ~ 353070 (+) True G222986
TU252950 lncRNA downstream 9193 359013 ~ 359318 (+) True G222994
TU252951 lncRNA downstream 10080 359900 ~ 360216 (+) True G222995
TU252956 lncRNA downstream 19370 369190 ~ 369461 (+) True G223000
TU252970 lncRNA downstream 44293 394113 ~ 394375 (+) True G223012
CI01000052_00294399_00296217.mRNA mRNA upstream 52721 294130 ~ 296806 (+) True CI01000052_00294399_00296217
CI01000052_00165058_00166912.mRNA mRNA upstream 182592 165058 ~ 166935 (+) True CI01000052_00165058_00166912
CI01000052_00061936_00072645.mRNA mRNA upstream 276861 60529 ~ 72666 (+) True CI01000052_00061936_00072645
CI01000052_00045445_00045867.mRNA mRNA upstream 303532 45318 ~ 45995 (+) False CI01000052_00045445_00045867
CI01000052_00430871_00437100.mRNA mRNA downstream 79913 429733 ~ 437122 (+) True CI01000052_00430871_00437100
CI01000052_00437783_00438718.mRNA mRNA downstream 87458 437278 ~ 438749 (+) True CI01000052_00437783_00438718
CI01000052_00496215_00499293.mRNA mRNA downstream 146395 496215 ~ 499724 (+) True CI01000052_00496215_00499293
CI01000052_00702155_00711896.mRNA mRNA downstream 352335 702155 ~ 711896 (+) True CI01000052_00702155_00711896
CI01000052_00714377_00725358.mRNA mRNA downstream 364557 714377 ~ 725389 (+) True CI01000052_00714377_00725358
TU253572 other downstream 920672 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 1699506 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 1748720 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 3081316 3431136 ~ 3460136 (+) True G224953

Expression Profile