G222982


Basic Information

Item Value
gene id G222982
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 349527 ~ 349820 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU252938
TCGTCTTGAGGGACTGTTCAGCAGGCAGCCCCGAAGCATGGCAGAACAACGCAGAGTCTCGTTCCCTGTTCTCAGGGAACCACGGTTACATCTGTAACCTGAGACGTTCCCTTTCAAAAGGGAACTCAACTCTGCGTTTCAGTACGCTATGGGGAACGATATACCCATGCCGCCATGCTTGAGGAGAGTGCATGCCAAGATGGCTAGACAAACGTCCAGCAGTTTCGAGAGAAACGCCAGATAGCAACTCACCCTCGGGTCACACAAAGGCTGTCAGTGACAGCATTCTGGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU252938 True 294 lncRNA 0.53 1 349527 349820

Neighbor

gene id symbol gene type direction distance location
CI01000052_00294399_00296217 NA coding upstream 52721 294130 ~ 296806 (+)
CI01000052_00165058_00166912 NA coding upstream 182592 165058 ~ 166935 (+)
CI01000052_00061936_00072645 NA coding upstream 276861 60529 ~ 72666 (+)
CI01000052_00045445_00045867 NA coding upstream 303532 45170 ~ 45995 (+)
CI01000052_00430871_00437100 NA coding downstream 79913 429733 ~ 437122 (+)
CI01000052_00437783_00438718 NA coding downstream 87458 437278 ~ 438749 (+)
CI01000052_00496215_00499293 NA coding downstream 146395 496215 ~ 499724 (+)
CI01000052_00702155_00711896 SLC16A1, MCT1A, SLC16A1A, SLC16A1B coding downstream 352335 702155 ~ 711896 (+)
CI01000052_00714377_00725358 ZYMND12 coding downstream 364557 714377 ~ 725389 (+)
G222977 NA non-coding upstream 4772 344539 ~ 344755 (+)
G222964 NA non-coding upstream 16166 333128 ~ 333361 (+)
G222906 NA non-coding upstream 20913 246602 ~ 328614 (+)
G222882 NA non-coding upstream 167362 177239 ~ 182165 (+)
G222878 NA non-coding upstream 196125 153017 ~ 153402 (+)
G222986 NA non-coding downstream 3012 352832 ~ 353070 (+)
G222994 NA non-coding downstream 9193 359013 ~ 359318 (+)
G222995 NA non-coding downstream 10080 359900 ~ 360216 (+)
G223000 NA non-coding downstream 19370 369190 ~ 369461 (+)
G223012 NA non-coding downstream 44293 394113 ~ 394375 (+)
G223545 NA other downstream 920672 1270492 ~ 1270927 (+)
G223694 NA other downstream 1699506 2049326 ~ 2104299 (+)
G224953 NA other downstream 3081316 3431136 ~ 3460136 (+)

Expression


Co-expression Network