RNA id: TU253380


Basic Information

Item Value
RNA id TU253380
length 240
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G223376
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 775842 ~ 776081 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACCCCCCGGTTTCACAGACAAGGCTTAAACCTAGTCCCAGACTAAAATACATGTTTGTGCTGTTTTATCTGAAAGCAACTTGCACTGACATATCTTAAAATATGTCAGTGTCATTGTTTTGTCTCAAGATGCACACCAATAATGTTTTTTTTTTTTTTTTCTAAGGCACTTTTATAAAAGCTATTTAAATGCCCTAATTAAACTAAGGCCTAATTCTGGCTGACTTAATACAGTACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253345 lncRNA upstream 5330 718697 ~ 770512 (+) True G223341
TU253346 lncRNA upstream 39077 734821 ~ 736765 (+) True G223342
TU253359 lncRNA upstream 91074 684545 ~ 684768 (+) True G223355
TU253357 lncRNA upstream 91749 683838 ~ 684093 (+) True G223353
TU253356 lncRNA upstream 93428 682187 ~ 682414 (+) True G223352
TU253295 lncRNA downstream 35251 811332 ~ 813564 (+) True G223293
TU253390 lncRNA downstream 144870 920951 ~ 921183 (+) True G223386
TU253490 lncRNA downstream 216733 992814 ~ 993014 (+) True G223476
TU253494 lncRNA downstream 224277 1000358 ~ 1000639 (+) True G223480
TU253464 lncRNA downstream 242550 1018631 ~ 1019051 (+) True G223450
CI01000052_00714377_00725358.mRNA mRNA upstream 50453 714377 ~ 725389 (+) True CI01000052_00714377_00725358
CI01000052_00702155_00711896.mRNA mRNA upstream 63946 702155 ~ 711896 (+) True CI01000052_00702155_00711896
CI01000052_00496215_00499293.mRNA mRNA upstream 276118 496215 ~ 499724 (+) True CI01000052_00496215_00499293
CI01000052_00437783_00438718.mRNA mRNA upstream 337093 437278 ~ 438749 (+) True CI01000052_00437783_00438718
CI01000052_00430871_00437100.mRNA mRNA upstream 338720 429733 ~ 437122 (+) True CI01000052_00430871_00437100
CI01000052_00793472_00831585.mRNA mRNA downstream 17391 793472 ~ 831953 (+) False CI01000052_00793472_00831585
CI01000052_00836931_00841228.mRNA mRNA downstream 59287 835368 ~ 841433 (+) True CI01000052_00836931_00841228
CI01000052_00906265_00916799.mRNA mRNA downstream 128475 904556 ~ 916813 (+) True CI01000052_00906265_00916799
CI01000052_01044855_01046432.mRNA mRNA downstream 268774 1044855 ~ 1046617 (+) True CI01000052_01044855_01046432
CI01000052_01143235_01145343.mRNA mRNA downstream 367075 1143156 ~ 1147150 (+) True CI01000052_01143235_01145343
TU253572 other downstream 494411 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 1273245 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 1322459 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 2655055 3431136 ~ 3460136 (+) True G224953

Expression Profile