RNA id: TU253300


Basic Information

Item Value
RNA id TU253300
length 272
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G223298
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 580900 ~ 581171 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGGCGAACTGGCCAGGCCGCCTGTTTTTCTGTGGGGACTGGACGAGGAATACATGACTTTTCTTGAACCTCTTCAATTACGAAATCAGAACAATTCAGAAAGAGAATCAGATTAATTGTCTCGACTAGGGAAAAAAAACACGCTGGTTCAATAAAACGAATCATGTTCTCGTCCAGCCCCGCTAGAAAACAAGCGTTTAACGGGGCATCTGGCCAGTTCACCAAATAAGCAAGCTCGGTAAATTCCTCCACATACCTCTCCAGCGGGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253268 lncRNA upstream 31116 549457 ~ 549784 (+) True G223274
TU253258 lncRNA upstream 47600 532988 ~ 533300 (+) True G223264
TU253237 lncRNA upstream 68519 511837 ~ 512381 (+) True G223244
TU253216 lncRNA upstream 109171 471510 ~ 471729 (+) True G223226
TU253210 lncRNA upstream 116907 463749 ~ 463993 (+) True G223222
TU253306 lncRNA downstream 15298 596469 ~ 596681 (+) True G223304
TU253356 lncRNA downstream 101016 682187 ~ 682414 (+) True G223352
TU253357 lncRNA downstream 102667 683838 ~ 684093 (+) True G223353
TU253359 lncRNA downstream 103374 684545 ~ 684768 (+) True G223355
TU253345 lncRNA downstream 137526 718697 ~ 770512 (+) True G223341
CI01000052_00496215_00499293.mRNA mRNA upstream 81176 496215 ~ 499724 (+) True CI01000052_00496215_00499293
CI01000052_00437783_00438718.mRNA mRNA upstream 142151 437278 ~ 438749 (+) True CI01000052_00437783_00438718
CI01000052_00430871_00437100.mRNA mRNA upstream 143778 429733 ~ 437122 (+) True CI01000052_00430871_00437100
CI01000052_00294399_00296217.mRNA mRNA upstream 284094 294130 ~ 296806 (+) True CI01000052_00294399_00296217
CI01000052_00165058_00166912.mRNA mRNA upstream 413965 165058 ~ 166935 (+) True CI01000052_00165058_00166912
CI01000052_00702155_00711896.mRNA mRNA downstream 120984 702155 ~ 711896 (+) True CI01000052_00702155_00711896
CI01000052_00714377_00725358.mRNA mRNA downstream 133206 714377 ~ 725389 (+) True CI01000052_00714377_00725358
CI01000052_00793472_00831585.mRNA mRNA downstream 212301 793472 ~ 831953 (+) False CI01000052_00793472_00831585
CI01000052_00836931_00841228.mRNA mRNA downstream 254197 835368 ~ 841433 (+) True CI01000052_00836931_00841228
CI01000052_00906265_00916799.mRNA mRNA downstream 323385 904556 ~ 916813 (+) True CI01000052_00906265_00916799
TU253572 other downstream 689321 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 1468155 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 1517369 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 2849965 3431136 ~ 3460136 (+) True G224953

Expression Profile