XLOC_009775 (si:ch211-149k23.9)


Basic Information

Item Value
gene id XLOC_009775
gene name si:ch211-149k23.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13898399 ~ 13905633 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019551
AATGCAGTGCAGTACATCTGGGAGACGGGAGAAGACAAGTACACCTTCAGATATTTCCACACAGGATTCTGGCAGTCTTGCGAAAAACATGCTGATGGAGAACGATGTCGTCGGTTCATGGATCTCACTCCTGGAGAGACTCATGGTGTGCTGTGGTTGTCAATGGTCGCAGAGTTCATGTACATCAGTTTGTTGGGCATGGGCTTCCTGCTTATGTGGGTGGAGGTGTTGTGCGCCCATAAAGAAATGCATGCGCTCAAAATCAACGCATTCGCTGCAATGTGCACTGTGCTCTCAGGATTGTTAGGGATGGTGGCTCATATGATGTACACCACCGTATTTCAGCTGACTGTGATTGTGGGGCCCAAAGACTGGAGGCCTCAGACGTGGGACTATGGCTGGTCATTTGCGCTAGCATGGGTGTCTTTCAGCTGCTGCATGGGCGCTGCAGTCATGACCCTTAACTCTTACACTAAAACAATCATCGAGAGGCATCACCGCCAGAGGCTTCGGTTAGAGGAGGCCCGCGCCACAACACACGCTCCATCCTATGATGAGGTGGTGCCGGGGGGCGGCCTGTACTCCATTAGCGGCCTTTTACAGTGTCCCAATGGGATGATTGACTCTGTGTGGGCATCAGATGGGAGCATGGGACTGGTGCAGCAGGGGGATGTGCCCACTCTGGTACTGGTTGGAGGATGCGGATCAGATTCGTGTGAAGACTGCGAGAGAGAAATGGACGAGATGAAGCTGACCATGAATGGAATTGACTCTCCTTGCTAAAAGAGGATAATGTGAGTTGAAgtgttagttcatccaaaaatgagaattctgtCATTTTAAAGGGGTTCTTGATTATGGTTTGACTATTTTATGTTTAGTTA
>TCONS_00019552
GAGAACGATGTCGTCGGTTCATGGATCTCACTCCTGGAGAGACTCATGGTAAGATGATTCCTGCAAAATTATATAATGATATcatagtaattcattcattcattttctcttcagcttagtgcctttattaatctggggttgccacaccagaatgaaccgccaacttatccgaaaggggtctggctgcagacctggtgcagtgcaatctgggctgcatccaatgctttttaatgggctcacctaaccccacccctaatcctacctgtcacagtgacgtcactagcttcaTTTTagattgtgtctgacattgcatcgctgagtgatgcagtctcagcttgcatcataaaagctGCATCCTGATAGTATtgacttatccagcaaatgtttttcgcaccggatgcccttacagttgcaacccattactgggaaacatccatacccacTCAGTCACAAagatacactacggccaatgtgAGCCTGACTCTACATGCGCTCAAATAAGAGAACATTATATGTTTGTGCTCCTCTCTGCCTGCTGCAGGTGTGCTGTGGTTGTCAATGGTCGCAGAGTTCATGTACATCAGTTTGTTGGGCATGGGCTTCCTGCTTATGTGGGTGGAGGTGTTGTGCGCCCATAAAGAAATGCATGCGCTCAAAATCAACGCATTCGCTGCAATGTGCACTGTGCTCTCAGGATTGTTAGGGATGGTGGCTCATATGATGTACACCACCGTATTTCAGCTGACTGTGATTGTGGGGCCCAAAGACTGGAGGCCTCAGACGTGGGACTATGGCTGGTCATTTGCGCTAGCATGGGTGTCTTTCAGCTGCTGCATGGGCGCTGCAGTCATGACCCTTAACTCTTACACTAAAACAATCATCGAGAGGCATCACCGCCAGAGGCTTCGGTTAGAGGAGGCCCGCGCCACAACACACGCTCCATCCTATGATGAGGTGGTGCCGGGGGGCGGCCTGTACTCCATTAGCGGCCTTTTACAGTGTCCCAATGGGATGATTGACTCTGTGTGGGCATCAGATGGGAGCATGGGACTGGTGCAGCAGGGGGATGTGCCCACTCTGGTACTGGTTGGAGGATGCGGATCAGATTCGTGTGAAGACTGCGAGAGAGAAATGGACGAGATGAAGCTGACCATGAATGGAATTGACTCTCCTTGCTAA

Function

symbol description
si:ch211-149k23.9 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-15 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000038052

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019551 False 884 mRNA 0.50 5 13898399 13905633
TCONS_00019552 True 1179 mRNA 0.49 3 13902371 13905532

Neighbor

gene id symbol gene type direction distance location
XLOC_009774 atg12 coding upstream 9694 13883872 ~ 13888705 (+)
XLOC_009773 grwd1 coding upstream 27500 13860299 ~ 13870899 (+)
XLOC_009772 zgc:174888 coding upstream 39235 13855039 ~ 13859164 (+)
XLOC_009771 flcn coding upstream 51064 13818500 ~ 13847335 (+)
XLOC_009770 josd2 coding upstream 191629 13683807 ~ 13706770 (+)
XLOC_009776 NA coding downstream 36440 13942073 ~ 13945576 (+)
XLOC_009777 NA coding downstream 44384 13950017 ~ 13954147 (+)
XLOC_009778 zgc:162509 coding downstream 60290 13965923 ~ 13976935 (+)
XLOC_009779 zgc:162509 coding downstream 87652 13993285 ~ 14025096 (+)
XLOC_009780 rusc1 coding downstream 123650 14029283 ~ 14055309 (+)
XLOC_009769 NA non-coding upstream 284211 13612654 ~ 13614188 (+)
XLOC_009768 NA non-coding upstream 396434 13499361 ~ 13501965 (+)
XLOC_009766 NA non-coding upstream 725701 13168872 ~ 13172698 (+)
XLOC_009765 NA non-coding upstream 782790 13112264 ~ 13115609 (+)
XLOC_009764 NA non-coding upstream 934522 12962960 ~ 12963877 (+)
XLOC_009782 NA non-coding downstream 248357 14153990 ~ 14158725 (+)
XLOC_009786 NA non-coding downstream 555629 14461262 ~ 14493478 (+)
XLOC_009787 NA non-coding downstream 569223 14474856 ~ 14481801 (+)

Expression


Co-expression Network