XLOC_009772 (zgc:174888)


Basic Information

Item Value
gene id XLOC_009772
gene name zgc:174888
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13855039 ~ 13859164 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019544
CTTTAAAGAGAGCGAGGAGAGAGACTGAACTGCAAGGACTTTCACTTTCAGAGTGCAAACAGCCTCCACACTGTCTCTGCTCCTTCAGGACGGATCAAATGTTTTGCTCTCAAGTCTGCCAGCTAGAAACCAAAGCCTCCAAACAAGGTGGCTGGAAAGGAAGGAAAGCACGAGGAGTAAAAGAAACAGGAAACTGAAATCCCATAGGAAACAGAGGAGTAGCTTGGTATCCAtcagaattctttttttttttttccatctgaaGATTGGGAATTTCCAAATGTCTGACTGGGATTGAGCCAGTGGGACTGAAAGGAGAGCAGCTGTCAATGAGGAACTGGGGAGAAAGTGCAGCAGTTGGAGGAAAAGGAGACGTGGGTTAGGATTTACTGCTGGGAAAGCCACCGAGATTGAGTTTCTTTCATAACTTTGGTGAAGCAATCTGTCGTTCAGAAGGACTCGGTTCTGAAGAACATGGGGAATATGGCCCACATTGGCCGGTAGAAGCATGTCACCAACAGTGCTGTTACTTCTATCAATATTGACTGTTCAAGGAAGTGGGTGCGATGATTTTATGAAGACGACGATCAGAAATCTGCAGGACTCCGTAAACATTGAAAGAACGAGCGGATTCCCAGAAGTGTTCCCGAAGAACTACGCCGTGTCTCACTATTTCAACGACAGCGCGCTGTGCAATGAGCCGtgttgtgtgttcagtgctgctgcAATCCTGTCACATTCTTGGCTTCAGCTCCTCCAACACCTCAACAGAGTTCACCTCAAATACGGGTTCATCAGCGAGCTGACGCACACATTGGACAACATAGCAAAAGAGAAAATCCTAGAACTTCCAGATCTCTCTGCTTTTCCATCTGTTGAGTCATCACCTGAAGGTCTTCTATTCTCAACCTCATCCCTCTTCACGCGATGGCTCAGTTTGGATTGTGCTTTCGGAGAGCATCCCTGCATCTTCCCCACACCAAGTGAAGCTGATCAAGGAAATCCGGCATTAGAGGAGGAAGAGAAAGTGGAGAATGGAGAAACTGTGGATGAGCAGCGGCCTCTGAAAGAAGGAGAGACTAGTAAAATACAACATGATCCGACCAACGCCTATGCAGAGTCACGTTCTCCAAGTTTCTCTCACTGGACCGTATCTATTCTGTGGATAACATCGAGACTGATCTGGTGAGAATTGAGAAATCAGTTTTAAATGTGCCACAAAATTTAGCCAGAAGGAGGCTTCACTTTGAAAGGACAGCTGCAGTGTTTGTCTCCTCGATTCAGTTTGGAAGCTAATTCACTTTACACTGCTAAAAAAAGCTTAGCACTTGCATGGGGATACTGAATAATCTCAAAATGTTTGGATGCAGTTATGGATCCATCTCTGTGGAAAAGGGAGGATATGAAAACAGACATGTCTAATAAGATGGTCATTTTTACCTGTACTTTTCACGCTCGTGTTTTTTTTCTGCATCATGTCTGCACTGATTGTATCTATCATTTCTGAATTGTGAATTTTGTGTCATTCGTAATAATTCAGGTAAAACCTGTCGACTGAATGTTTTAACAATGAATGTAGTGAAAAAGCGAACTATACATGAAGCCAAAAGTATCCGCTTATCGCTCAGTGTTTAAGAGGACAACAAAACTTATTTACTACAGTAAATTCAAGCCATATGAAACTGTAAAACTGTAGCATAGGAACCACAGCACCATCAGATGCAAGCTACTc
>TCONS_00019545
GCAAACAGCCTCCACACTGTCTCTGCTCCTTCAGGACGGATCAAATGTTTTGCTCTCAAGTCTGCCAGCTAGAAACCAAAGCCTCCAAACAAGGTGGCTGGAAAGGAAGGAAAGCACGAGGAGTAAAAGAAACAGGAAACTGAAATCCCATAGGAAACAGAGGAGTAGCTTGGTATCCAtcagaattctttttttttttttccatctgaaGATTGGGAATTTCCAAATGTCTGACTGGGATTGAGCCAGTGGGACTGAAAGGAGAGCAGCTGTCAATGAGGAACTGGGGAGAAAGTGCAGCAGTTGGAGGAAAAGGAGACGTGGGTTAGGATTTACTGCTGGGAAAGCCACCGAGATTGAGTTTCTTTCATAACTTTGGTGAAGCAATCTGTCGTTCAGAAGGACTCGGTTCTGAAGAACATGGGGAATATGGCCCACATTGGCCGGTAGAAGCATGTCACCAACAGGAAGTGGGTGCGATGATTTTATGAAGACGACGATCAGAAATCTGCAGGACTCCGTAAACATTGAAAGAACGAGCGGATTC
>TCONS_00019546
CAGTGCTGTTACTTCTATCAATATTGACTGTTCAAGGAAGTGGGTGCGATGATTTTATGAAGACGACGATCAGAAATCTGCAGGACTCCGTAAACATTGAAAGAACGAGCGGATTCCCAGAAGTGTTCCCGAAGAACTACGCCGTGTCTCACTATTTCAACGACAGCGCGCTGTGCAATGAGCCGGTAAGATGACAGTTCAACAAGGGCCAGTCAGTGACGTGATGATGCAAGTTTTATTTGCATGATCTTCTTCTGTGTTTATCAACATGTATTACAAATGCTCTTTAGTTGGATGCAATAATGATAAACGTATTTAGATTTCTGGATTATTGGGGCCTAGTATCAAAAACAGTTGTCAATAAGGATTATTCTGTGTAAACATGTTTATCCAAATTGCagaaaaaacatttaatgcaAATCTTAACCCTCCAATCTCAGCACACTAATGAACACAGGCTTATTTGTAAACAAATATGCCTATTAAAGATTTATCTCTCTTCCTTGAAAGTTTATTTACCCCAAAATGCTTAATTAATGTCTTCTAAAGAGGGACATTGCTTATAATAGAgtaaacaaatttaataatcCAATGCAAAAAAAGACCGATTGCAATggcaaacatgttgtgttgtgcagt
>TCONS_00019547
tccagctgcaacccatctctgggaaacatccacacgcacattcacacatactctcatacactacagacaatttagcctgcccaattcacctgtgccgtatgtctttggactgtgggggaaaccggagcacccggaggaaacccatgcaaatgcagggagaacatgcaaactccacacagaaacgccaagtgagcgaccttcttgctgtaagtcgacagcactacatactgcttCGCCCAGAAATTTAACATATTTTACCCAAAACAATGTGTAAgggtgtttttaaaactatagcCTCCTGTATTTGTCACTGAGTCAATTTAAAAATCGTCACTCATCTTGACAGTTTTTATAAACTTTATTAAATACCGAGACCTAATTTTGATTtgttgtgtctttgtgtgtgtgagtgtagtgttgtgtgttcagtgctgctgcAATCCTGTCACATTCTTGGCTTCAGCTCCTCCAACACCTCAACAGAGTTCACCTCAAATACGGGTTCATCAGCGAGCTGACGCACACATTGGACAACATAGCAAAAGAGAAAATCCTAGAACTTCCAGATCTCTCTGCTTTTCCATCTGTTGAGTCATCACCTGAAGGTCTTCTATTCTCAACCTCATCCCTCTTCACGCGATGGCTCAGTTTGGATTGTGCTTTCGGAGAGCATCCCTGCATCTTCCCCACACCAAGTGAAGCTGATCAAGGAAATCCGGCATTAGAGGAGGAAGAGAAAGTGGAGAATGGAGAAACTGTGGATGAGCAGCGGCCTCTGAAAGAAGGAGAGACTAGTAAAATACAACATGATCCGACCAACGCCTATGCAGAGTCACGTTCTCCAAGTTTCTCTCACTGGACCGTATCTATTCTGTGGATAACATCGAGACTGATCTGGTGAGAATTGAGAAATCAGTTTTAAATGTGCCACAAAATTTAGCCAGAAGGAGGCTTCACTTTGAAAGGACAGCTGCAGTGTTTGTCTCCTCGATTCAGTTTGGAAGCTAATTCACTTTACACTGCTAAAAAAAGCTTAGCACTTGCATGGGGATACTGAATAATCTCAAAATGTTTGGATGCAGTTATGGATCCATCTCTGTGGAAAAGGG

Function

symbol description
zgc:174888 Is expressed in several structures, including brain; olfactory placode; pancreatic bud; presumptive diencephalon; and yolk syncytial layer.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030328-33 Is expressed in several structures, including brain; olfactory placode; pancreatic bud; presumptive diencephalon; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDARG00000077176

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019544 False 1732 mRNA 0.44 5 13855039 13859164
TCONS_00019545 False 547 mRNA 0.46 2 13855093 13855847
TCONS_00019546 False 639 lncRNA 0.37 2 13855732 13856566
TCONS_00019547 True 1109 lncRNA 0.44 2 13857574 13858829

Neighbor

gene id symbol gene type direction distance location
XLOC_009771 flcn coding upstream 7704 13818500 ~ 13847335 (+)
XLOC_009770 josd2 coding upstream 148269 13683807 ~ 13706770 (+)
XLOC_009769 NA coding upstream 240851 13612654 ~ 13614188 (+)
XLOC_009768 NA coding upstream 353074 13499361 ~ 13501965 (+)
XLOC_009767 pitpnc1b coding upstream 401221 13424534 ~ 13453818 (+)
XLOC_009773 grwd1 coding downstream 1135 13860299 ~ 13870899 (+)
XLOC_009774 atg12 coding downstream 24708 13883872 ~ 13888705 (+)
XLOC_009775 si:ch211-149k23.9 coding downstream 39235 13898399 ~ 13905633 (+)
XLOC_009776 NA coding downstream 82909 13942073 ~ 13945576 (+)
XLOC_009777 NA coding downstream 90853 13950017 ~ 13954147 (+)
XLOC_009766 NA non-coding upstream 682341 13168872 ~ 13172698 (+)
XLOC_009765 NA non-coding upstream 739430 13112264 ~ 13115609 (+)
XLOC_009764 NA non-coding upstream 891162 12962960 ~ 12963877 (+)
XLOC_009782 NA non-coding downstream 294826 14153990 ~ 14158725 (+)
XLOC_009786 NA non-coding downstream 602098 14461262 ~ 14493478 (+)
XLOC_009787 NA non-coding downstream 615692 14474856 ~ 14481801 (+)

Expression


Co-expression Network