RNA id: TCONS_00019545


Basic Information

Item Value
RNA id TCONS_00019545
length 547
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_009772
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13855039 ~ 13859164 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAACAGCCTCCACACTGTCTCTGCTCCTTCAGGACGGATCAAATGTTTTGCTCTCAAGTCTGCCAGCTAGAAACCAAAGCCTCCAAACAAGGTGGCTGGAAAGGAAGGAAAGCACGAGGAGTAAAAGAAACAGGAAACTGAAATCCCATAGGAAACAGAGGAGTAGCTTGGTATCCAtcagaattctttttttttttttccatctgaaGATTGGGAATTTCCAAATGTCTGACTGGGATTGAGCCAGTGGGACTGAAAGGAGAGCAGCTGTCAATGAGGAACTGGGGAGAAAGTGCAGCAGTTGGAGGAAAAGGAGACGTGGGTTAGGATTTACTGCTGGGAAAGCCACCGAGATTGAGTTTCTTTCATAACTTTGGTGAAGCAATCTGTCGTTCAGAAGGACTCGGTTCTGAAGAACATGGGGAATATGGCCCACATTGGCCGGTAGAAGCATGTCACCAACAGGAAGTGGGTGCGATGATTTTATGAAGACGACGATCAGAAATCTGCAGGACTCCGTAAACATTGAAAGAACGAGCGGATTC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030328-33 Is expressed in several structures, including brain; olfactory placode; pancreatic bud; presumptive diencephalon; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDART00000143983

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021901 lncRNA upstream 240905 13612654 ~ 13614188 (+) True XLOC_009769
TCONS_00021689 lncRNA upstream 353128 13499361 ~ 13501965 (+) True XLOC_009768
TCONS_00021900 lncRNA upstream 682395 13168872 ~ 13172698 (+) True XLOC_009766
TCONS_00021688 lncRNA upstream 739484 13112264 ~ 13115609 (+) True XLOC_009765
TCONS_00021899 lncRNA upstream 891216 12962960 ~ 12963877 (+) True XLOC_009764
TCONS_00019547 lncRNA downstream 1727 13857574 ~ 13858829 (+) True XLOC_009772
TCONS_00021902 lncRNA downstream 86226 13942073 ~ 13945576 (+) True XLOC_009776
TCONS_00021690 lncRNA downstream 94170 13950017 ~ 13954147 (+) True XLOC_009777
TCONS_00019559 lncRNA downstream 154325 14010172 ~ 14011596 (+) False XLOC_009779
TCONS_00021903 lncRNA downstream 232524 14088371 ~ 14091845 (+) True XLOC_009781
TCONS_00019543 mRNA upstream 7758 13822137 ~ 13847335 (+) True XLOC_009771
TCONS_00019542 mRNA upstream 9096 13818743 ~ 13845997 (+) False XLOC_009771
TCONS_00019541 mRNA upstream 29117 13818500 ~ 13825976 (+) False XLOC_009771
TCONS_00019540 mRNA upstream 148323 13685871 ~ 13706770 (+) True XLOC_009770
TCONS_00019539 mRNA upstream 148327 13685871 ~ 13706766 (+) False XLOC_009770
TCONS_00019548 mRNA downstream 4452 13860299 ~ 13870899 (+) True XLOC_009773
TCONS_00019549 mRNA downstream 28025 13883872 ~ 13888705 (+) False XLOC_009774
TCONS_00019550 mRNA downstream 28135 13883982 ~ 13888699 (+) True XLOC_009774
TCONS_00019551 mRNA downstream 42552 13898399 ~ 13905633 (+) False XLOC_009775
TCONS_00019552 mRNA downstream 46524 13902371 ~ 13905532 (+) True XLOC_009775
TCONS_00019534 other upstream 413460 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other upstream 413498 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019518 other upstream 1474247 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019517 other upstream 1554807 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019511 other upstream 1609197 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019585 other downstream 2010377 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019587 other downstream 2298477 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019609 other downstream 3661101 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019610 other downstream 3714963 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019630 other downstream 5209498 19065345 ~ 19128471 (+) False XLOC_009830

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU110601 False 2853 lncRNA 0.37 3 CI01000016 5887681 ~ 5923379 (-)
tiger barb (Puntius tetrazona) TU110601 True 704 lncRNA 0.42 2 NC_056708.1 4130565 ~ 4131444 (-)