RNA id: TCONS_00019549


Basic Information

Item Value
RNA id TCONS_00019549
length 584
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_009774
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13883872 ~ 13888705 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaaagTGAGCTCAGCGTGCGCCTGCTCTGTTCGTTGTGCTGCTTGTGTGTGTCAGTCTGAGGATGTCTGACAACGCAGAATCTCCTACAGAAAACCCGAAAGATGAACATTCGCTTCAGCACGCTGTCACAGATCACTCTGAGTCATCGGACGAGAAGAAAAAGATTGATGTGCTTTTAAAGGCGGTCGGTGACACACCCATCATGAAGACCAAAAAATGGTCTGTGGAGAGAAGGAGGACGATACAGTCACTCGCCCAGTTCATCTCACGCTTCCTCAAGCTGGAGCCCAGCGAACAGTTGtttatttatgttaatCAGTCGTTTGCGCCATCACCGGACCAAGAAGTTGGTGTGCTTTTTGAGTGTTTCGGAAGTGACGGCAAACTAGTACTTCATTACTGCAAGTCTCAGGCCTGGGGATGAATGTACcgctctctttttttctctcctaTTTTTTGTCTCCATCATTTATACACATACATGTCCAATAACATCACTTATGcataattattagtttttataactTATTGATTTCCATGtcttatattttgtaaataataaagtgtaaataatattgtaaaa

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0000045 autophagosome assembly biological_process
GO:0000422 autophagy of mitochondrion biological_process
GO:0044804 autophagy of nucleus biological_process
GO:0006501 C-terminal protein lipidation biological_process
GO:0034274 Atg12-Atg5-Atg16 complex cellular_component
GO:0034045 phagophore assembly site membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04068 FoxO signaling pathway
ko04140 Autophagy - animal
ko04138 Autophagy - yeast
ko04136 Autophagy - other
ko04621 NOD-like receptor signaling pathway
ko04622 RIG-I-like receptor signaling pathway
ko05131 Shigellosis
ko04131 Membrane trafficking
ko04121 Ubiquitin system
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-071205-7 Predicted to be involved in several processes, including C-terminal protein lipidation; autophagosome assembly; and autophagy of mitochondrion. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm. Predicted to be part of Atg12-Atg5-Atg16 complex. Predicted to be active in phagophore assembly site membrane. Is expressed in brain; liver; and muscle. Orthologous to human ATG12 (autophagy related 12).

Ensembl:

ensembl_id ENSDART00000101304

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019547 lncRNA upstream 25043 13857574 ~ 13858829 (+) True XLOC_009772
TCONS_00019546 lncRNA upstream 27306 13855732 ~ 13856566 (+) False XLOC_009772
TCONS_00021901 lncRNA upstream 269684 13612654 ~ 13614188 (+) True XLOC_009769
TCONS_00021689 lncRNA upstream 381907 13499361 ~ 13501965 (+) True XLOC_009768
TCONS_00021900 lncRNA upstream 711174 13168872 ~ 13172698 (+) True XLOC_009766
TCONS_00021902 lncRNA downstream 53368 13942073 ~ 13945576 (+) True XLOC_009776
TCONS_00021690 lncRNA downstream 61312 13950017 ~ 13954147 (+) True XLOC_009777
TCONS_00019559 lncRNA downstream 121467 14010172 ~ 14011596 (+) False XLOC_009779
TCONS_00021903 lncRNA downstream 199666 14088371 ~ 14091845 (+) True XLOC_009781
TCONS_00021904 lncRNA downstream 265285 14153990 ~ 14158725 (+) True XLOC_009782
TCONS_00019548 mRNA upstream 12973 13860299 ~ 13870899 (+) True XLOC_009773
TCONS_00019544 mRNA upstream 24708 13855039 ~ 13859164 (+) False XLOC_009772
TCONS_00019545 mRNA upstream 28025 13855093 ~ 13855847 (+) False XLOC_009772
TCONS_00019543 mRNA upstream 36537 13822137 ~ 13847335 (+) True XLOC_009771
TCONS_00019542 mRNA upstream 37875 13818743 ~ 13845997 (+) False XLOC_009771
TCONS_00019551 mRNA downstream 9694 13898399 ~ 13905633 (+) False XLOC_009775
TCONS_00019552 mRNA downstream 13666 13902371 ~ 13905532 (+) True XLOC_009775
TCONS_00019553 mRNA downstream 77218 13965923 ~ 13976935 (+) True XLOC_009778
TCONS_00019554 mRNA downstream 104580 13993285 ~ 14003475 (+) False XLOC_009779
TCONS_00019555 mRNA downstream 104646 13993351 ~ 14022175 (+) False XLOC_009779
TCONS_00019534 other upstream 442239 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other upstream 442277 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019518 other upstream 1503026 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019517 other upstream 1583586 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019511 other upstream 1637976 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019585 other downstream 1977519 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019587 other downstream 2265619 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019609 other downstream 3628243 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019610 other downstream 3682105 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019630 other downstream 5176640 19065345 ~ 19128471 (+) False XLOC_009830

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_05914765_05917918.mRNA True 1195 mRNA 0.36 4 CI01000016 5914067 ~ 5918052 (+)