Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_009774 |
| gene name | atg12 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 13883872 ~ 13888705 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| atg12 | Predicted to be involved in several processes, including C-terminal protein lipidation; autophagosome assembly; and autophagy of mitochondrion. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm. Predicted to be part of Atg12-Atg5-Atg16 complex. Predicted to be active in phagophore assembly site membrane. Is expressed in brain; liver; and muscle. Orthologous to human ATG12 (autophagy related 12). |
| id | name | namespace |
|---|---|---|
| GO:0006914 | autophagy | biological_process |
| GO:0000045 | autophagosome assembly | biological_process |
| GO:0000422 | autophagy of mitochondrion | biological_process |
| GO:0044804 | autophagy of nucleus | biological_process |
| GO:0006501 | C-terminal protein lipidation | biological_process |
| GO:0034274 | Atg12-Atg5-Atg16 complex | cellular_component |
| GO:0034045 | phagophore assembly site membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| ko04068 | FoxO signaling pathway |
| ko04140 | Autophagy - animal |
| ko04138 | Autophagy - yeast |
| ko04136 | Autophagy - other |
| ko04621 | NOD-like receptor signaling pathway |
| ko04622 | RIG-I-like receptor signaling pathway |
| ko05131 | Shigellosis |
| ko04131 | Membrane trafficking |
| ko04121 | Ubiquitin system |
| ko03029 | Mitochondrial biogenesis |
| id | description |
|---|---|
| ZDB-GENE-071205-7 | Predicted to be involved in several processes, including C-terminal protein lipidation; autophagosome assembly; and autophagy of mitochondrion. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm. Predicted to be part of Atg12-Atg5-Atg16 complex. Predicted to be active in phagophore assembly site membrane. Is expressed in brain; liver; and muscle. Orthologous to human ATG12 (autophagy related 12). |
| ensembl_id | ENSDARG00000069545 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00019549 | False | 584 | mRNA | 0.42 | 4 | 13883872 | 13888705 |
| TCONS_00019550 | True | 668 | mRNA | 0.40 | 4 | 13883982 | 13888699 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_009773 | grwd1 | coding | upstream | 12973 | 13860299 ~ 13870899 (+) |
| XLOC_009772 | zgc:174888 | coding | upstream | 24708 | 13855039 ~ 13859164 (+) |
| XLOC_009771 | flcn | coding | upstream | 36537 | 13818500 ~ 13847335 (+) |
| XLOC_009770 | josd2 | coding | upstream | 177102 | 13683807 ~ 13706770 (+) |
| XLOC_009769 | NA | coding | upstream | 269684 | 13612654 ~ 13614188 (+) |
| XLOC_009775 | si:ch211-149k23.9 | coding | downstream | 9694 | 13898399 ~ 13905633 (+) |
| XLOC_009776 | NA | coding | downstream | 53368 | 13942073 ~ 13945576 (+) |
| XLOC_009777 | NA | coding | downstream | 61312 | 13950017 ~ 13954147 (+) |
| XLOC_009778 | zgc:162509 | coding | downstream | 77218 | 13965923 ~ 13976935 (+) |
| XLOC_009779 | zgc:162509 | coding | downstream | 104580 | 13993285 ~ 14025096 (+) |
| XLOC_009768 | NA | non-coding | upstream | 381907 | 13499361 ~ 13501965 (+) |
| XLOC_009766 | NA | non-coding | upstream | 711174 | 13168872 ~ 13172698 (+) |
| XLOC_009765 | NA | non-coding | upstream | 768263 | 13112264 ~ 13115609 (+) |
| XLOC_009764 | NA | non-coding | upstream | 919995 | 12962960 ~ 12963877 (+) |
| XLOC_009782 | NA | non-coding | downstream | 265285 | 14153990 ~ 14158725 (+) |
| XLOC_009786 | NA | non-coding | downstream | 572557 | 14461262 ~ 14493478 (+) |
| XLOC_009787 | NA | non-coding | downstream | 586151 | 14474856 ~ 14481801 (+) |
