XLOC_009836 (tmem196b)


Basic Information

Item Value
gene id XLOC_009836
gene name tmem196b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19677484 ~ 19681282 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019640
TGATTGGGGTCACACAAACCCTGTGGCAGCAGAAAAGCCAACACTCCTTCTCACCTATATGGAGCGGCGCATGTTTTCTAGTCTGTGGACTAAGTGGGATCCTGTGTGCGAAGAAGAGAACTGGACTGACTATGATCCTATTTTCTGCCTGTTGCATCTGTGGGCTTATCGGAGGGATTCTCAATGTCCAGTTTGTGAGGGCGATGATGAAACGGGCAAGCAGCCTGCACTCTTTTCATCTAGCCTTCCTCTGCCTGGACAGCCTGGGCATTCTGGGCTGCACCCTCTCCACCTGGCTGACATGCAGACTCGCCAGCTCTGAACAGAAAAGACTGTTTCTGGAAAGAGATTTGTCCCTGCATCATTCTGTGGAGATGGGAGAGAAGGTGAAGGCGGTGTGTGTGGCATCTCTTTAAAGACTGTGAAatctcttttgtttttattaaaactggaAAAGTGTTGATTTGGTTTGTAGAGATAAAAGTAGCAGTTATTTGTCTAGAAAGGCTTTATATCAACAT

Function

symbol description
tmem196b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM196 (transmembrane protein 196).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110914-248 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM196 (transmembrane protein 196).

Ensembl:

ensembl_id ENSDARG00000090140

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019640 True 521 mRNA 0.47 3 19677484 19681282

Neighbor

gene id symbol gene type direction distance location
XLOC_009835 macc1 coding upstream 109 19637384 ~ 19677375 (+)
XLOC_009834 sp8b coding upstream 138708 19536614 ~ 19538776 (+)
XLOC_009833 NA coding upstream 163493 19508738 ~ 19513991 (+)
XLOC_009831 NA coding upstream 265063 19375634 ~ 19412421 (+)
XLOC_009832 NA coding upstream 296192 19380866 ~ 19381292 (+)
XLOC_009837 BX005389.4 coding downstream 5431 19686713 ~ 19715210 (+)
XLOC_009838 BX005389.1 coding downstream 23142 19704424 ~ 19704538 (+)
XLOC_009839 twist1b coding downstream 51261 19732543 ~ 19734149 (+)
XLOC_009840 CU855688.1 coding downstream 123739 19805021 ~ 19809117 (+)
XLOC_009841 ankrd28b coding downstream 374596 20055878 ~ 20154859 (+)
XLOC_009826 NA non-coding upstream 1165285 18502566 ~ 18512199 (+)
XLOC_009821 NA non-coding upstream 2007027 17669300 ~ 17670457 (+)
XLOC_009847 NA non-coding downstream 848843 20530125 ~ 20531772 (+)
XLOC_009848 NA non-coding downstream 1003658 20684940 ~ 20695517 (+)

Expression


Co-expression Network