RNA id: TCONS_00019640


Basic Information

Item Value
RNA id TCONS_00019640
length 521
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_009836
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19677484 ~ 19681282 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATTGGGGTCACACAAACCCTGTGGCAGCAGAAAAGCCAACACTCCTTCTCACCTATATGGAGCGGCGCATGTTTTCTAGTCTGTGGACTAAGTGGGATCCTGTGTGCGAAGAAGAGAACTGGACTGACTATGATCCTATTTTCTGCCTGTTGCATCTGTGGGCTTATCGGAGGGATTCTCAATGTCCAGTTTGTGAGGGCGATGATGAAACGGGCAAGCAGCCTGCACTCTTTTCATCTAGCCTTCCTCTGCCTGGACAGCCTGGGCATTCTGGGCTGCACCCTCTCCACCTGGCTGACATGCAGACTCGCCAGCTCTGAACAGAAAAGACTGTTTCTGGAAAGAGATTTGTCCCTGCATCATTCTGTGGAGATGGGAGAGAAGGTGAAGGCGGTGTGTGTGGCATCTCTTTAAAGACTGTGAAatctcttttgtttttattaaaactggaAAAGTGTTGATTTGGTTTGTAGAGATAAAAGTAGCAGTTATTTGTCTAGAAAGGCTTTATATCAACAT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110914-248 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM196 (transmembrane protein 196).

Ensembl:

ensembl_id ENSDART00000150588

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021917 lncRNA upstream 163493 19508738 ~ 19513991 (+) True XLOC_009833
TCONS_00021915 lncRNA upstream 265063 19375634 ~ 19412421 (+) False XLOC_009831
TCONS_00021916 lncRNA upstream 265063 19375706 ~ 19412421 (+) True XLOC_009831
TCONS_00021705 lncRNA upstream 296192 19380866 ~ 19381292 (+) True XLOC_009832
TCONS_00021914 lncRNA upstream 525684 19131365 ~ 19151800 (+) True XLOC_009830
TCONS_00019641 lncRNA downstream 5431 19686713 ~ 19715210 (+) True XLOC_009837
TCONS_00019645 lncRNA downstream 123739 19805021 ~ 19807133 (+) False XLOC_009840
TCONS_00021918 lncRNA downstream 124553 19805835 ~ 19808908 (+) False XLOC_009840
TCONS_00021706 lncRNA downstream 125802 19807084 ~ 19809073 (+) False XLOC_009840
TCONS_00021707 lncRNA downstream 126661 19807943 ~ 19809073 (+) False XLOC_009840
TCONS_00019638 mRNA upstream 109 19637384 ~ 19677375 (+) False XLOC_009835
TCONS_00019637 mRNA upstream 18742 19637384 ~ 19658742 (+) False XLOC_009835
TCONS_00019636 mRNA upstream 30524 19637384 ~ 19646960 (+) False XLOC_009835
TCONS_00019639 mRNA upstream 33032 19637445 ~ 19644452 (+) True XLOC_009835
TCONS_00019635 mRNA upstream 138708 19537073 ~ 19538776 (+) True XLOC_009834
TCONS_00019643 mRNA downstream 51261 19732543 ~ 19734008 (+) False XLOC_009839
TCONS_00019644 mRNA downstream 51261 19732543 ~ 19734149 (+) True XLOC_009839
TCONS_00019647 mRNA downstream 374596 20055878 ~ 20151747 (+) False XLOC_009841
TCONS_00019648 mRNA downstream 374748 20056030 ~ 20154859 (+) True XLOC_009841
TCONS_00019649 mRNA downstream 480523 20161805 ~ 20164454 (+) True XLOC_009842
TCONS_00019630 other upstream 549013 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019610 other upstream 2106550 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019609 other upstream 2160402 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019587 other upstream 3523026 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019585 other upstream 3810319 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019642 other downstream 23142 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019651 other downstream 486552 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019655 other downstream 615541 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019658 other downstream 815491 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019667 other downstream 1232131 20913413 ~ 20913484 (+) True XLOC_009854

Expression Profile

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