CI01000054_01294452_01302654


Basic Information

Item Value
gene id CI01000054_01294452_01302654
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1294204 ~ 1303671 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01294452_01302654.mRNA
ATGTTTCTCAGAAAATGATACAGTAGGCTTTATAGGGTTAAATAACATTTTTATTGGTATTCATGGTCCATTTATTAATAAAGCATACATATTTCTATATGCATATTGTCTGAGACAGTTTTGAGCTGTTTTGCTACCCAATATCTCTATCTTTACTGCCTAATAACTGAGCTCAGAGCATCAGACTTTCCCAAACACATAATATGTCTTGAATAATGTAGTAATCTGAAGGAATCCCATGCAAGACATACTTGTTTCTTATGCACCAAACACTCTTTAAAGACCTTTGGGTTATATATGAACATTTTTATTATTAAAAATCTTTGTGTACTGTTGTTTCTGTGCACTGGAAGCTGCTTCTGTGACCAAGACAAATTCCTTGTGTGTGTAAAAACAGACTTCCCAATAAATCTTATTCAGAATCTGATTCCCTTTTTTGAGATGCACTAACAGTAGCAGTAGAGTCCAAACAGTAGCATGAAATTATATCAGAGGTATTATCAAAAACATATGTCTACTATTACAGACCAAAATAAATGTTATGCAGGTTCTCGGGAGGCTTTGATGGAAATCGCGATAGGGGAGGAGAAGAAGGGAGAGGCAGGGAAGACGCCGATGCTTGACTGGGCTGCAGGGGGCATCCTCAACCGCACGAGGAAAATCCAGCCAATGCCCGTCCTCTTCTCACACACGCCATAGCGTAGAGAAGAGAAAGAGAGTGTGTGTGAGAGAGAGAGGAGTTCTGGTCTTCCCTGCTTCCACATCCATCAAGTCTCAACCACTGGAGTCAGAGGGGAGGAAATCACAAGAGGCCGTGCGCGCGCGCTGCTACTCCTCCTCGGTCTTCGCGTGGTTTTGCGGGGATTTGACGCGATCACGGGCAGACGGATGTGCCGACAAAAGCGCCTGCCTTAAAGTTGGATACCGAAAACGAAAGGTTTACTCCTACCTAGTTACCTTAACGAGGAGCGGGGAGACGAGAGCGCGAGCCCCGTGTTTTGCTGCGTTCGGAGCACCATGAAGCTCCCGTGCTGGATGGCGCTCGCGCTGCTGCTGCTGGCGCAGACTGCACTGGTAAGAATGACACTCTATTGTGATCTATTGTTACGAGAGGGCGACTTACCGCCGGTCACACGCGCTCACAACATGTCCAACATTCGGGATTATGTTCGTGCGCGTTTGCGACAGCGCGTCTCTGGCGGCCTGGGGAGCGCTGTAAGTGGGCTGGAGAAAGCTCCGAGCTGGGACCTACGGTGCGGGTTTCTCTTGAGCACCTTTGCCTTGTTTGGCCATTTTGATCTGGATGTGGGATCATGTTGGACTCCTGGGTTCAGCACTGAATCGGTGTTTTGTGCTGTAGACGACAAAGACAACCATAGAGAGGATGTTCTCAGGGCCTCTTGCTTGAGGGAAAGAGTAGAGGTAGTGACGCGTTTCCGTGGAGATAGCGGAACCATGAGGATAATTGGGTTAACGAGTGAATGTGGGCGTGGCCACGTGCTCTGGGGACTTCTGGAATGTCGTTAACCATCCAGTAGCAGGGCGGGGTGAGCGAGGTGAGCGCCAGACGAGTGTCTATACAGTGTTAAAAGCAGCCCGGAGTTAATTGGGAACGAGGAATATTTAGATAACGCTTGTCAGATGCGATGTGCAGGCCATTAATCAACAAGATTTGCGTTTATTATCAAGGAAAATGATGAACTGCATGCAGCTAAATGCTTTCATTCATTTTGAGCACGCGCTCATGCGTCTAATGAGATGGCTTTGTGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01294452_01302654.mRNA True 1775 mRNA 0.47 4 1294204 1303671

Neighbor

gene id symbol gene type direction distance location
CI01000054_01266491_01275814 NA coding downstream 18390 1265360 ~ 1275814 (-)
CI01000054_01257527_01259314 NA coding downstream 34890 1257527 ~ 1259314 (-)
CI01000054_01246516_01250511 KLHL43 coding downstream 42955 1244881 ~ 1251249 (-)
CI01000054_01203148_01209012 PPT1 coding downstream 85069 1202905 ~ 1209135 (-)
CI01000054_01151083_01156699 FAM83HB coding downstream 136032 1150724 ~ 1158172 (-)
CI01000054_01307641_01325658 PUM1, PUM1.S coding upstream 3292 1306963 ~ 1325658 (-)
CI01000054_01336032_01344581 NA coding upstream 32319 1335990 ~ 1344621 (-)
CI01000054_01349952_01353207 NA coding upstream 46182 1349853 ~ 1353521 (-)
CI01000054_01358110_01360645 FABP3 coding upstream 54331 1358002 ~ 1360975 (-)
CI01000054_01389675_01399257 NA coding upstream 85918 1389484 ~ 1399257 (-)
G230231 NA non-coding downstream 49872 1243813 ~ 1244332 (-)
G230211 NA non-coding downstream 55157 1238344 ~ 1239047 (-)
G230241 NA non-coding downstream 56049 1235825 ~ 1238155 (-)
G230216 NA non-coding downstream 62753 1231158 ~ 1231451 (-)
G230178 NA non-coding downstream 64069 1185533 ~ 1230135 (-)
G230281 NA non-coding upstream 4515 1308186 ~ 1311785 (-)
G230286 NA non-coding upstream 73739 1377410 ~ 1377653 (-)
G230226 NA non-coding upstream 78647 1382318 ~ 1385445 (-)
G230923 NA other upstream 1533566 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 1550470 2857402 ~ 2860573 (-)
G230908 NA other upstream 1753977 3057648 ~ 3063343 (-)
G231645 NA other upstream 2678176 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 3366480 4670151 ~ 4681361 (-)

Expression


Co-expression Network