CI01000054_01203148_01209012 (PPT1)


Basic Information

Item Value
gene id CI01000054_01203148_01209012
gene name PPT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1202905 ~ 1209135 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01203148_01209012.mRNA
ACAGTGACTAGTTCACTATTTCACCTTATTCACTTCCTTATTTAGTGTTTTCTCTTCCTGTAAGCGTATTCTGCTAACAGCAGGGCTGTGAATGTGTTCAGATCTTCAGATTGAGATTTAAGCATGAGTTTCTCAGCGGCGAAGCTTCGCCTCATCTCTGTATCTGCGTGTCTGCTGTTGCTGCGTGGATCATCGTGGGGATCCAATGCCACAGTTCCTCTGGTGATATGGCACGGCATGGGAGACAGTTGTTGCAATCCACTCAGCATGGGTGCGATGAAGAAGATGGTGGAAGAGGAAGTCCCAGGAATTTATGTGATTTCCCTGATGATCGGCAAGTCTGTTCTACAGGACACTGAAAATGGCTTCTTCATGGATGTCAATGAGCAGGTGTCTTTTGTGTGTGATCAGCTGTCCCGGGACCCTAAACTCAAGGGAGGCTACAATGCAATGGGATTCTCCCAAGGGTCACAGTTTCTGCGAGCAGTTGCTCAGCGCTGTCCAGATCCTCCAATGAAGACCCTGATCTCAGTCGGTGGGCAGCATCAAGGGGTTTTTGGTCTTCCGCGATGTCCTGGCGAAAGTTCTCATATCTGTGACTGGATTCGCAAGAAGCTGAACTCAGGAGCATACACAGATGCAATTCAAAAACACTTGGTGCAGGCACAATACTGGCACGATCCCCTCAATGATGGCTTGTATAAAAAATACAGTCTCTTCCTTGCCGACATCAATCAGGAGCGGGTGGTGAATGAGACCTACAAGAAGAATCTCATGTCTCTGAATAAGTTTGTCATGGTTAAGTTCCTGCAGGACACTATGGTGGATCCTGTGGATTCTGAGTGGTTTGGTTTCTATAAAGCTGGTCAAGATAAAGAGCTGGAAACGCTGCAAGAAAGTGCTATATATAAAGAGGATCGACTGGGGTTGGCAGAGATGGATTCTGCAGGGAAGCTTGTGTTCCTCGCCTCTGATGGAGATCACCTACAGTTCACCCGAGAATGGTTTAATGAGAATTTACTTCCCTACATGCGCTAAACACAGTGACATCATGCTTATTCCCAATAAGAAAGTTTACACACACTCAATCCAGCTGATTTAGGCATGTTTCTAACTCTTACACAATCACCAAGTCTCATATATAAATTAAGCCAGTCTTATTTTGTTGCACTGATCTGATTTTTATTTGACTGATTTAATTAAAAAAATCTCTTTAATGAAATATAGATTTTAATCGTTCTAATTGTGTACTATGTTTGTTTATTTTTGTCACACAATAAA

Function

symbol description
ppt1 Predicted to enable palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation and receptor-mediated endocytosis. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 1. Orthologous to human PPT1 (palmitoyl-protein thioesterase 1).

GO:

id name namespace
GO:0005764 lysosome cellular_component

KEGG:

id description
K01074 PPT; palmitoyl-protein thioesterase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01203148_01209012.mRNA True 1281 mRNA 0.43 9 1202905 1209135

Neighbor

gene id symbol gene type direction distance location
CI01000054_01151083_01156699 FAM83HB coding downstream 44733 1150724 ~ 1158172 (-)
CI01000054_01115294_01116274 GPR3, GPR6, GPR186 coding downstream 86083 1114693 ~ 1116822 (-)
CI01000054_00979998_00989171 TCEB3 coding downstream 213734 979998 ~ 989171 (-)
CI01000054_00974025_00979306 PITHD1 coding downstream 223599 973900 ~ 979306 (-)
CI01000054_00965111_00970121 LYPLA2, LYPA2 coding downstream 232784 964642 ~ 970121 (-)
CI01000054_01246516_01250511 KLHL43 coding upstream 35746 1244881 ~ 1251249 (-)
CI01000054_01257527_01259314 NA coding upstream 48392 1257527 ~ 1259314 (-)
CI01000054_01266491_01275814 NA coding upstream 56225 1265360 ~ 1275814 (-)
CI01000054_01294452_01302654 NA coding upstream 85069 1294204 ~ 1303671 (-)
CI01000054_01307641_01325658 PUM1, PUM1.S coding upstream 97828 1306963 ~ 1325658 (-)
G230380 NA non-coding downstream 34085 1168490 ~ 1168820 (-)
G230251 NA non-coding downstream 58319 1144174 ~ 1144586 (-)
G230356 NA non-coding downstream 91387 1111266 ~ 1111518 (-)
G230346 NA non-coding downstream 138944 1063761 ~ 1063961 (-)
G230344 NA non-coding downstream 139991 1062613 ~ 1062914 (-)
G230178 NA non-coding upstream 17288 1185533 ~ 1230135 (-)
G230216 NA non-coding upstream 22023 1231158 ~ 1231451 (-)
G230241 NA non-coding upstream 26690 1235825 ~ 1238155 (-)
G230211 NA non-coding upstream 29209 1238344 ~ 1239047 (-)
G230231 NA non-coding upstream 34678 1243813 ~ 1244332 (-)
G230923 NA other upstream 1628102 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 1645006 2857402 ~ 2860573 (-)
G230908 NA other upstream 1848513 3057648 ~ 3063343 (-)
G231645 NA other upstream 2772712 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 3461016 4670151 ~ 4681361 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location