CI01000054_01151083_01156699 (FAM83HB)


Basic Information

Item Value
gene id CI01000054_01151083_01156699
gene name FAM83HB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1150724 ~ 1158172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01151083_01156699.mRNA
ATTCTGCATTTGAATATCATATGCAATTTGTTGCTGCTGTAAATATAACAGAATGGCACAATGGGCCGAGTATTACAATTTTAATAAGAGTCATGGGTTCATTATTAAAAATGTTTAGTCATGCAAAAGTCTATTTTTTGCTTGCTAAAAATAATTGCAACAAATAAGCTACTGAAACACAGACTGTCTGTCTGTTATATGTCAGTCTCTCTGCCTGTTGTTACAGATATCCCAGGAATGTAAAGATTCTTCTGCCTTGGTAATTTCCAGTTATATGCATAGAATGAATTTACATGAGCAATGTATGTGCAGACATCTACATGAACACATCAATCTACTAAAAAAGTAAAACTGAATCATATCTAACTTGGCACTTGCAGTGTAAGTTTCTCTGCTCTGGCACAGTGTAATTTCACAACATCTCTTGGCTATTTCTTCACATTTGGCCATCCAGTACAGTCTGAATCATTATTATCGGTCAGTCATTATAATAGCTTTATATTATGTTCAGAATAAAGTGAAGCAGTTCAATGGGGATGAATCCACTCCAACACGATATACTGGTCTGGGTGTCGACTCGTAAGGAAATATGCTGACAGCACAATAATCGAGGCTAGTCATGAGTAGATGCAATCTTCTTTGGCATCACATAACATTCCTGTTAGCAAATTTGTTATGAATCCCTTATACATATGAATTTACAACATATAGACGTGCTATCTTATGAATTAGCCACAACATGCCTTGGTTAATTTATGACCTGCTCAAAGTCTGACTCTAACTCGCATAGTTAACGCAGCGAGTCTCTTTCACAAGAACATCAGTAAAACACTCCCTTCTTTGATTCAGTCACATGTTTCTTCAGTTTTTCCTTTTCTGTTGATGTCTTTTCGGTTCCCCTCTTGCCCACAATGAGTCACTCGCCGACAGGCTGACACCGTTTCCCTGGTGATGTCTAAAATACAAACAAATGTACACAAGTGCCCACAACCTTCAAAAACCTTCAAACTGGGACCTAACCTTGCTTAGGGGTCATTGTCTGGAAGGCCCCATGCAGAACAGATAGGAATTTCATATGTACACAATGAGTCAAGCAGCTCCCAGAGTTTTTCGGCAGGTTGATCTGAACTAGCATGCAGTAGCACATTTTTTAGTTGCATACATATTTCATAATACACACTTCATGATCTGTGTCGCACAACATATAGTAGTGGCTTAGTATGCAGAATTTGCGCTTCCTGGATCCTGTTATATCATAGTGCAGATGGTAAATTTAAAAGTGTTATTTCCTGTTTGTTAATGTAGCCTAGTAGTAGGCAGATTTTGCTTACAACAAATATGTTTGTGCTAAAATTGTAAACATTTTCTGCAATAATGTAATTGAAGAGTTTCCAGATGCTCTGATTAGATTGTTCCACATGCTTATTTATTAAAAAAAAATATCGTTTCTTAGGTTGTTTTCCCTGCTCCACCATGGCCCATCGCTCCCAGAGTTCCTCAGTGGGAGACAACCCCCTGGATCCCAATTATTTGCGCCCACATTACCGGGAAGAGTATCGCATGGCTATCGATGCCCTGGTGGAGGAGGACATTGAGGGCTACTACAACTTTTTACAAAGTGCTAATATAGTTGACTTTTTATCAAGGTCAGAGATCGAGCATATTAAAAGCACTGTGCATTCACCACAGAGTGCTGGAAATGTACCAGAACTGCTGTATCGAGAACTAGATCAGGATGGGTCTTCTGACACCTACTGGCCGCTGCATTCTGATTTGGATGCACCAGGACTAGACCTTGGCTGGCCTCTGCAGCAACATAGTTTTGTGGGTCCCACAGAGGTCACAATGTTGGTAAACCCTGCTGAACCCGAAGTGGCCAGCATTAAGGAGCAGGCACGGCGACTCATCAAAAATGCTCATCAGGTCATTGCAATAGTGATGGATATTTTCACAGATGTTGATATATTTTCCGATCTTCTGGATGCTACAGCACGTCATGTGCCTGTCTATATTCTGCTGGATGAACAAAATGCCCATCATTTTGTTAACATGGTGGCAAGCTGTAAAGTTAACCTGGATATGATCCATATGATGCGGGTACGGACAGTAGCAGGCATTACCTATTTCTGCCGCACAGGGAAATCATTTAAAGGTCAAGTGATGGACCGCTTTCTTCTGACTGACTGCAGAGCAGTGATCAGTGGAAACTATAGCTTTATGTGGTCTTTTGAGAAGATCCACCGCTGCATCGCCCATTTGTTCCTTGGAGAACTTGTTGCCACTTTTGATGAGGAGTTTCGTATTTTGTTTGCTCAGTCTCAGCCTCTTGTTGTTGAAAATGCCCTTGTACCCATGCCACAAGATAGTTACCTTGGCAGCCAGTTTGGCTTGAAAAGAACTCAGTCACTAAGGAATCCCAGAGGATATCATCGCCAGCCTGAACTTACTGGTTACCCATTCGGGGATCGTCTTGAAACTTTACTACCTTTTAGGAGGGATGACCCGTTCCGCCATACGATTGAACCAAGTGCAGGTCCTATGCAGGTCACAAAATATGCAACACAGCAGTTCAAGATGCAACAGTCATTCTTGGATCAAGGACGCTCAATGTTGGCCTCCCGGCAGCTGGAAATGAATGCCTTTAAGAGGCATAGCTATGCCGAGGGAACCCGCGAGACCTACGCCTCCTCCCGGCAGTACATGAAACAGCGTGTAATGAACAACTTGGAGGAGATGGAAACGCATTACCAGCGAGAACAACATTACTATCAGAGCGAGGGCATGGGACCTGGTTCTGAGCGCGGGCCACATGACCGCCTTAACTACGGCATGTACCAGGCAGATCAACAGTCTGATTCTGCATATCCACCTGAACTTGAAGCACCAGGAAATATGAATGTTTTATCCTCTGATGACCTCAAAAGTGATTCAGAAAAACAATATAACACAGGAGGGGGACGCTATGGTCCACAAAGCCACAAGAGGCCTGCTGCAGGCCACTCGTATGCCTGTCAGAGTTCGCCGACTCAGCCGCATCCTCCAGACCACAAGCAGTTGTTCTCCACTGGAGAACAGGTACGGCAATCCGAGGACCCTGGTGTGAAGCAGGGATTGCGGAGCTGGAGAATCAACTCTTATCTCAGCGCTTATGAAGATGCAGGAGAGGAGGGTCTGAATCAGCCCATGGGTCAAGATGCTTTTGACGAGCCATATCAACAACCTGACAGCAGGCTTTATGGCTCAGAGGGACCAGGCCTTAATTTTAACATTCGAGAGCGTCAAAATATCCCAACTAAGCCAAACCTTGACTTGCGACCACGCTATGGTAAACCCATCATTCAAGATAGGAATCAGGTAAAAGATGTTACCTCTGACTTCGGTCCCACGAGTACTGACACATTAAAGCCAGCAATTTCAGCTTCATCACTAGCATCTTCAACAGACAATGAGAAGGAGGTGGAACCGAGGGAACCAAGGGAAATCAGCATTACCAAGCACGAGTCGTTCCGAACTCGAATTAACCCAATGCTGCAAAGGAGCTCAAGACTACGGTCTTCTTTAATCTTCAGCTCCTCAAAGCTGGAGCAACACAGTTCCTCGCAAGCCAAGTCTGGTGGGGATTTACAAGAGGAGAAAGATGAGAGTGAGCCTATTCGATACTCATCCATTGTGGCAGAGATTCTCGAGAAGAGGAGATCACTGTCAAGAGAGCCGTTTGATTGGAGTAAGCATAAAAAAGCAGATGAAAAAGATGTTAAAAACTCATCAACAGGAGACCTGACTACGATCACAGACGCCAAAGAGGAGCCCATCAAAGAAAACGAGAAACCTGACAACCCTGAACCTAAGGACAACAAAGTTACACAGCCAACAGAGCCTTCCAGATCTCAGCAAACAGCTTCCCTAAACGTGAATGATCCAGCAAGCCGACTTAAGTACTTTAAAGATCTGGAAGAAAAGAGAAAGACCTCAAAATTAGAGTTAGATTTGGGTGCTAAAAGTCAAGAAGCAGGTACGAAAAAGTCAGAACTATCTGATACAGCAACCAAAGTTCCAAATGTGCTTATTACTTCAGAGGACTCCACTGTAAAGACACAAGAACCATCATTTACCCTAACAGATCCTGTACCACAGCGCCTGTCGTTCACATCAAATCCAAAACCTTCTGAAGTCTCTGTGGACAGGCCGAACACAAACAGCAAAACTCTGACAGAGAGCACAGCTGATACGGCAAAGAAAGAGCCTGCTAAGGAGCCAACTAAGTCACTTCGGCCTTTCCCTTCACCCAAGTTCTTAAAACCATTCAAAAGCTCTCAGTCCTCTCATCGTCGGATCTCATGCGGTGAGGAGATTCTCACGGATGCGACAGATGCTGAAAAGAGCGAGCTTAAGAAGACCCGCAGCCTCAGCACATCGGGCATTTCCCGCACAGAGTCTAAAGAAAGCCTGAGCTCCCTAAACCTTGGAAGCTCTGATGGCAAAGATACAAAGGCCCTTGACTTCCTCAAGAAACAAACGCAGAGACTGAAGGGTTTACTTGGGCCAAAGGGAGAAAAGAAGCACTCAGGAGTGTCCAACTCTCAAGAGGACAAGTCAATGAAAACAGTTCCTGAGGTCCAAGAGGAACCCACGGACAAAGAGAAACCCTCTGAATCTTTAGCCACAGTAGAGACCAACAAACCCAATGCTAAACCAACTCAATCCCGCTATCAGTCCTCTACCTCGAATGTAATATTCAGTAGCAACCTCAGGGATGATACCAAGGTGATCCTAGAGCAAATCTCAGCAAATAGCCAGAAGAATAGACAGCAGAACGAAGAGTCTGGGAAAAGCGAGGGGGGCAAGGAAGACGATGTTTCCAATTCTTCTCTCCAAAGCCGGTCCCGGTTCAGCCGAGCTCCAGCTAACCCACAGGACAGGGACAATCTGCTGAAGAGAATAGAGAGCATGCGCAAAGAAAAGAAAGTCTACAGTCGCTTTGAGAATTTACGAATCTCTTTAAATTTCAACATTAAAAATTCAGTGTCGTTATATCCCATGACATGCAGCCTCTCAACTATTTATGTTTTCATTTATGATAGAAATAAATGGAGTAGACTATCACAGAATCTCCTGTACTATTTGTGGGATGTTTCACTTACATATCTGTCATTCTACTTCAACAGATGGGGAATAACCTGGGATAACAAAACAAGGAGGAAGGGGCCAGAGAAGTGTAAAGAGAACCTGAAACTATACTAAAAAATTGTACCAAACATCCCCAATACTGCTGTGAACAGACACAGAGATAAAACCATCTGCTAAATGACTGGTAACCTAAATGGTCCATGGATCTTGTATAAACACCACGAAAATAGCACAAGCTCAAATATGAGGAGTCTTGCTGCAGCAAGAGGAATATTCCTCGCTCTGTGCCAATCTGAGCCCACAGATGATTCACTTTGCCCTTATAAGGCATCAGGGCATACCTCAACAGTAATCACACTGCAATCCCTGCAGAATAGAGAAACACAAATCAGGCCAAAAGGAGGGTTCGAACGTCAAGAGACTTTTCTCAGCTTTTTCTACTGGACCTTTTAGTTCCTTGTGATGCAAATAAA

Function

symbol description
fam83hb Predicted to be involved in intermediate filament cytoskeleton organization. Predicted to colocalize with keratin filament. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 3A. Orthologous to human FAM83H (family with sequence similarity 83 member H).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01151083_01156699.mRNA True 5600 mRNA 0.44 5 1150724 1158172

Neighbor

gene id symbol gene type direction distance location
CI01000054_01115294_01116274 GPR3, GPR6, GPR186 coding downstream 33902 1114693 ~ 1116822 (-)
CI01000054_00979998_00989171 TCEB3 coding downstream 161553 979998 ~ 989171 (-)
CI01000054_00974025_00979306 PITHD1 coding downstream 171418 973900 ~ 979306 (-)
CI01000054_00965111_00970121 LYPLA2, LYPA2 coding downstream 180603 964642 ~ 970121 (-)
CI01000054_00929337_00955240 ANKIB1A coding downstream 195050 929132 ~ 955674 (-)
CI01000054_01203148_01209012 PPT1 coding upstream 44733 1202905 ~ 1209135 (-)
CI01000054_01246516_01250511 KLHL43 coding upstream 86709 1244881 ~ 1251249 (-)
CI01000054_01257527_01259314 NA coding upstream 99355 1257527 ~ 1259314 (-)
CI01000054_01266491_01275814 NA coding upstream 107188 1265360 ~ 1275814 (-)
CI01000054_01294452_01302654 NA coding upstream 136032 1294204 ~ 1303671 (-)
G230251 NA non-coding downstream 6138 1144174 ~ 1144586 (-)
G230356 NA non-coding downstream 39206 1111266 ~ 1111518 (-)
G230346 NA non-coding downstream 86763 1063761 ~ 1063961 (-)
G230344 NA non-coding downstream 87810 1062613 ~ 1062914 (-)
G230343 NA non-coding downstream 88832 1061572 ~ 1061892 (-)
G230380 NA non-coding upstream 10318 1168490 ~ 1168820 (-)
G230178 NA non-coding upstream 68251 1185533 ~ 1230135 (-)
G230216 NA non-coding upstream 72986 1231158 ~ 1231451 (-)
G230241 NA non-coding upstream 77653 1235825 ~ 1238155 (-)
G230211 NA non-coding upstream 80172 1238344 ~ 1239047 (-)
G230923 NA other upstream 1679065 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 1695969 2857402 ~ 2860573 (-)
G230908 NA other upstream 1899476 3057648 ~ 3063343 (-)
G231645 NA other upstream 2823675 3981847 ~ 3982823 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002412 NA coding CM030136.1 CM030136.1 13389185 ~ 13406063 (+)