AMCG00002412


Basic Information

Item Value
gene id AMCG00002412
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13389185 ~ 13406063 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002412
CCGCCTGCGCCGCACACAGGGGTGGAGTCTGAGCCGGGGAGAGGACGCGCTCACACACGGGAGAGAAAGGCAGGAAGaaagagtggggggaaaaggaggaggaggaggacaagaagaagaacaacaacaacaagaagtGGAGGAAGACGAATACAAACACAACGCAGAGCAGGGAGTTTTGAATACAAAGGGCGAATAAGCAGAGGAGCTGGGCTTACACCTCTGCACGGATACCTGGCCAGgctgagtccccctcccccacccccaggcCACGCCACCTCTCTCCCAACATGGCGCGACGCTCCCAGAGCTCCTCGGTGGGGGACAACCCCCTGGACCCCAACTACCTGCCACCGCACTACCGCGAGGAGTATCGGCTAGCCATCGACGTGCTGGTGGAGGACGACCTGGAGGGCTACTATGATTTCCTGCAGAGCCAGGACGTAGTGGGCTTCCTGGCCCAGCCTGAGATCGATCACATCAAGCACAATGTGCAGGCCCCCCGCATGATCGCCCAGCCAGAATACCCTTACCTGGAGAGTGGGCTCCCGGACCCCGAAGGTTCCTCCGACACTTACTGGCCTCTCCACTCTGACCTGGATGCTCCCGGCCTGGACCTGGGCTGGCCCCACCTGCAGCACAGCTTCATTGGCCCCACAGAGGTCACAACACTGGTCAACCCATCTGACCCCAACATGCCCAGTATCAAGGAGCAGGCCCGACGACTCATCAAGAACGCGATGCAGGTCATCGCTGTGGTGATGGACATGTTCACAGATGTTGACATCTTCGCTGACCTCTTAGACGCAGCGATGCGCAGGGTCCCCGTGTACGTCCTGCTGGACGAGCTCAATGCGCACCACTTCATCGCCATGGTGGCCAACTGCAAGGTCAACCTGGACCTGATCCATttcaTGCGTGTGCGAACGGTGGCAGGCACCACGTACTTCTGCCGCACTGGGAAGTCTTTCAAGGGCCAGGTGATGGACCGCTTCCTGCTGTCTGACTGCAAGGCTGTACTCAGTGGGAACTACAGcttcATGTGGTCATTTGAGAAGATCCACCGCTGCATCGCCCACCTATTCCTGGGGGAGCTGGTGACCACGTTTGACGAGGAGTTCCGCATCCTGTACGCCCAGTCCCAGCCATTGGTCCTGGAGAAAGCGCTGGTACCCATACCAGGAGACAGTGGCTACTCCACCGCCCAGTACAGAAACACAAGGGTGCCATCCTTCCGCAAGCCGAAGGGGTACCTGCACGTGGAGAGCTCTCGGCACTCTGAGCGGTCAGGATACTCGGACCGCATGGACCTGGAGAGGGACATGATGCCCTTTAGGCGGGAAGAGCCTTACCGCCTACCCCTGGATCTGCCGCCGATGCAGATGTACAGCCAGAGGTATGGCCAGCAGTTTGAGATGGAGCGGTCTTACATGGACCACGGCAGAACCGTGACGGCCTCCAATAAGATGGAGATGAATGCATACAAGAGGCACAGCTATGCAGAGGGGACCCATGAGAGTTACTCCTCCTCCCGTCAGTTTATGAAGCACCGGGTCATGAACAACCTAGAAGAGACTGAGACGCAGAGCAGCCAGTACCAGAGAGAGCATATGTACCGCCAGGGTGAGGGGATGGGTTCGGGGAAGGGCATCTATGAGAAGATCCGAGGGTACCACCAAGTGGAAGAGTACCCCGATGACCACCAGTATCCCCATGACATGCTAGAGCCACCGGGCACAGGCAATTACATGCTAGATTACATGTCTTCCACCTCCTCCAAGGACATAAAGCAGGACTCAATGAATGTAATGGCCCCAGGCGAGGGGCGGTACGGGCAAGCCCCTCAAAGACGACACAACTCGGGGCAGCCGGTCGTCTGCCTGAGCTCCCCCTCCCAGATGGCCCCCTCGGATCAGAAGCACCTCTTCCACGAATCCAGTCTGGAACGCCAGCCAGAAGACCTGGGTGACAAGCAGGGGCTGCGCAAATGGAGGATCTCATCCTTCCTGAGTAACTTTGAGGACACTGGAGAGGAGGGTCTTCAGCAGCCTCTTGGGTCTGATGCCTTTGAAGAGCCCTCCCACCCTTCAGAGGGACAGCTACACGGCCCAGAGGCTTCAGTGCCCAGGTACGCCACCAGAGAGCCCCCTAAGATGCCTGTGTTCAAAACTAGTGATCTCCCACGTTACGGCAGGCCGCTCTTGCCTGAAACATCAAGTAATGTCCCGCCGGGGGAATCCTTGCTCGCAATCTCCAAAACAGCAGTTGAGGGAGCCGAGGATACAGCGCCCAAAGAGGGCAGAGAAACCAGCATTACAAAGCACGAGTCCTTCCGCACCAGGATGAATCCCCTGCTTCAGAGGAGCTCCAGACTACGCTCCTCGCTGATCTTTAGCTCCTCCAAGCTAGAGCAGCACAGCACCACGCAgcttaaaacaacagaaatgacTGAAGAAGATGAGAATGATCCCCTGAGGACCTCTTCTATTGTGGCTCAGATTCTGGAGAAGAGGCGGTCCATTGTAAGGGAACCATTTGAGTTTAATTTGAGCAGCCAGAATAAGACAACCACTAAAGACTCTTCTGTAGCTGATGCACATATAACAGACGAAAAGCCAAAAGTCGCTGCAAGTGAAGAAACGCCAAATAAACCTGCACCAGTGGAGCCTGCAAAGGTCACCCCACCTGTGAAACCATTTTTGAGCACAATGCCACAAGTGGACATGAACAATCCAGAGGCCAGACTTTCGTACTTTAAAGAATTAGCTGCCAAACGAAAGGCTACCAAGATGGCTGCAGATGCTGCCAGCAACAGCCCAGAACCTGCTTTTAAAAAGCCAGACATCTTAGTGACGCCTCCAGCACAGGTCTCCGTAAAACCGTCAGAACCTAAGGACAAAGTACAAGAGCCTCAAGCTCCAGTGCAGCAAGAGGTCAAACCTGCTGCCGAAGTTCCACCTAAAGAACCTGCTCCAAAGTCATCCAAACCCTTTGCGTCACCCAAAATCTTTAAAAGAGATCCCCCCACTAAGACCCCTGTTTCGCGCAATGCCTCCTGCTCTGACGATATTCTGAAAGATGCTACAGATTCCCAGAAGAGTGAGATGAAGAAGTCTCGCAGCATGAGCATCTCGGCACTGGCTTCGTCTGACAACTCAGAAAAATTGCACAAGACCTTCGGCTCTAATTCATCTCTGAATCTTCTGGATGGGGGTGAAGGGAAGCAGGAATCCAAAGCCAAGGATTTCATCAAGAAGCAAACTCAGAAGCTCAAGGGCCTCCTTGGAACAAAAAGTGATAAGAAGGGGACAGCAGCAGCCACAACTGAAGAAAAGTTGGCAGCTCAGACCATGAGTACAGTCCAGGAAGTGACTGAGGAGCTGCCTTCCAAGTCTCCCACCTTATCTCAGAGCTCCACTAAGTCGGACCAGGTAGAGACTGTGAAGACAACTGAGACCAAAGAGGAGAAGGTTGTCCAAAAACCTGCCACAACGAAACCAAGCCAGAGCCGCTTCCAAACATCCACCGCCAATGTCCTCTACAGCAGCAACCTCAGGGACGACACCAAAGTCATCCTGGAACAGATATCCGCTAACAGCCAGAAAAACAGGATGGAGAAACAGTCTGCAGGTAGCATGGACAGTCCCAAGGAGGGCGACAATGCCGACACAACAGTGGACTCTTCCAGGAATGCCAGCTCCTACCAGAGCAGGAGCCGGTTccaacagacacaaacaaacccaGAGGACCGGGACAACCTGCTCAAGAAGATGGAGAGCATGCGCAAGGAGAAGAAGGTCTACAGCCGCTTTGAGGTCTTTTACAAGAACAAGGAAGACGGCAACAAGAACATGGATTCTGAGGAGGAAGGGAGTGTAGGCAAGACAAAACCAAAGCTGGGCctcttcaaaagcaaaaaataaggCTTCTGGTTGGAAAAAACATGCCAGCGCAAGAGCTGTTGAAGTGGTaaccatacaaaaaaacacttaccATTAAGGAAAATGTATACGATGCAGattaaaagtgtaatttataAAGAGATATCTATGTTTACATTTGGAACTTATGAAACCTTAAAAATCCAACTTTCAGCAAAGCCAGCTTTTACTATACTTGTAAATAACCCTTTTTTTCAATGGATCTCCCATTGTGATATTCAACTTCACAAGAACCTCGTCTGCCGCTTTTAGGATCACAGCCTTACTTGCCAGAGTGTTGTTTGCTTTACTCTATGCATTGTGACCCTTGAACTCTGAAACAAAGGGAAACAGTAGAGTTGAACACATCCTCCCAAAAAAGGGAGGATGAGAAAGGGGTGGGAAGAACTGTGGTGGTacccattttaatttctttccatcttttaaTTTACCTGGCATTCTATTGTATATAGCCTAACAGATAGggattttaaattttacataCCAAACAGGAAGCAAGGTACTTTTTTAACCAACAATTTTGATATTGTGCAAAAAGGCCAAAGGAAAATGATAGCATTTTTTATTCTCTGTACAAGCACTGAAAAAGCTTCTTCTTTTTAGGATAACGTCTTAATCTggtatattttgtgtgtgaaatacatACGTATGAGTACTGTAACTCTGAAACAGCATAGATGCAGTCTGTATCAAAGTGCCATGTAACCAGCAggattagaaaaagaaaagctttttacCCTTTtatgggaaaaaacaacatgattttGAGTCTGCGTTATACTAAAATTAAAGCCAAGCTGGAATCCGTCCAGTATAACCCATCAGATACTTTATAGGAACATGCTTGTTCATGAGTGTGAATGAGATTTTATTCCAGATGTatctttatacatatttttatatctttATATCTGATTATCCCAAGGGCACTgtgacaatgtatttttatgcacTGATATTTAACTCCCTGGTTAAGGCTTCTgagttgtattttctttttctaccaTTTTCTTGCTGCTGAATTCTCACGTTAGAAGTTAGAAAACTGTTGCATAGTTTATTAAAGGTTTTGTTTCAAGTTTTTTAGGCTTCAGTTAATAATATTACTGTCTTGAATTTCAATATTCAAATATGGTGTAGGGATAACTGCTTCAACAAAGCTGGCAGGGATCCCCCGAGTATTCAGATTGGTATGTGTGGGGCGTGTTGGCACATCTGAACGAGAATTGCTCAGAATTGCATATTTAATTCCATGAGGAGTCAACTGAACCCCAGCCTCAGATCTCTTAAATAGAAGCCCCCCACAGTAACAGTAAATAGTAAGTATGACCTATATTTCAGACGGTTGTCTTCTACTTTCGCcatataaaaacagaacatttttttccagacaCAATCTGATGTTTTGTACTCTAGGATTAGGAGTACAATAAGGTACGAACATAGTGGAACCACACTGACATccataaagtaattaaaacatgaacacaaGGCTTATGAAAGGTATTGCCAATAGGAAGTAAGTGCTGAAAAATACACCTAGTACGATATTTTTGTATACCTTGACAGAGTatgacatattatatatatgtaagactatatatatattcttgcaTTCCTAACTAATTCAAAACTTCTGATCATGTTTAGTGACTCGTGAAACCTGTAtcctcttttaaaataaagaggTTGGACCTGTTTGCCTTAATGTGTTTGTTATATAAGCAGAAATGGCTGCTGCTTCAGTAATCCAAAAGTAGGATTGGCACTCTTCCTTCTCATTAAACACACCATAGAATTTGAAAAGAAGGAAAGATTTAGAGTCCGCCATTactagtgtatgtgtgtatatatagatatagatgtatatacaCACTCTCGTGTTGTGGGAACTGGATTATGGGAACTGAAGtctagatttttgttttttggggaaaCCAAGTGTGTTAATCTGCTTAAATTGCACAGATTCAGAAAGACCAGCTATCAACTATCTTAATGACgtacaaagaaacaaattaaaagtttacaaacattGTCCAGGATTATTTTACCTTGCCTTTCTACAGTATGTGGTCCTGGTCTAAATGCATTATATAGTATCTGTTGTTATGTGTCATGTGCCTTAACATTATGCCACTTTTATTACtagccgttttttttttttttctattattgtaTATGATGTTGTATTTAGAACGAAATGCTTTTTTGGAAGTTCTCTTTCTGTGGCTAGTTGTCTCGGGTTTTTCCAGTGTTGGGCATGTGTAACCTCCAGTACATGAAACTCGTCAGAAAGGCCTGCAGGCATACATCAGAAACTGTGAAGCCCAGTATTGATGGATCAAGGTGTACATATTTCATCAATCATGACTGTCAACCAGAATGCCTTTCAGGGtgtatatttgttaaatgtgtaaattggaatgtcaaaaactatttgaatggACAAAGAACTGTATTCAAACCAATGTTGTAAAGAGTTTTGCTTTTGGGTATAATATAGagtagacatttttttttttaagtgtaaaaatGGGAACAAACAGCCACCATAGCTCGTCTGAACCATAATATCTTCATGCTGTACACATTTAAATCCAGTTGTTTTGCTTCTACTAATCCTTTTCAATACAGATATCCATAGCAGCTAATCAAATCATTTGCACTGATAAAGTTTGGGAGGGAAAGTCATTGTAGAACCAAGCTGCCTATTCTTAACTTGTGTGcacatgtgagtgtgtgtgctgtgttttgttaATAAGAAATGACTACACGCTCACCTCTGCTCTTTAATGTGTTGATGAAAAGCGAAAAGGATAAATTGGATAACGTACGTGACATGGATAGATTTAGCTTCAGGTTCTTTCTATGACTGAACCACTAACAATTGatctacactgtatttattgcaaaatgTCATTTGGCTGTAGTAATGTTGAGGGAATGATGAATCTGAGATCCTAGGGTTGAAGAATAATGAGATTTTGATCCACTGTATGTTAAGTTGCTTTTGGCTTTACAGATCTTTCCCTATAAACCATACATTTGGGATCCTTTATAGGAATGAACAGTCTGGCacatattataaaaatacaaaacttcaTATGGTATAACCTCCTTTTATTTTTGGAACAGATTTCAAATTGAGCCAAAATCACCTTGTTCAGAGCCAAAGATAATGGCAGACTACTGTAGCTGGACAGAAAGCTAATGGAGAAGTGTGTTGTGATTCCAATGGCAATTCAGATTGGACGCCGCATTCCCAGATGGGTTTTTCAGGGATCGGTTCTTTATGTTGCCATTAACATACATGTAAGGACTTTGCCATTGCTGTACACAATAGTGTGGAGATGGAAGGCTGTATCATGGAGCGTTTCATGTTTTGCAAAGAATTAGCTGTAAATAATTTGCAGCGTGTTCGGGTAGCCTTTAAGTTAATTGTGAATGTTGTTCAGCTTTAACCAAGATTACATGTGTTTCCATTACTAAGATAAGCCAACTCTGTTAATGCAAACAGAAATCAGAACACCGTATGTCATGTTTAGAATAAAACATTCTTATTCACAAAGCTTTGTCTGGGcagttattaaaatactttcttgTTATCATTCCAGGTCAAGTTTTTATCTGAA

Function

GO: NA

KEGG:

id description
K23931 FAM83H; protein FAM83H

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002412 True 7576 mRNA 0.45 5 13389185 13406063

Neighbor

gene id symbol gene type direction distance location
AMCG00002407 NA coding upstream 12897 13375580 ~ 13376288 (+)
AMCG00002406 NA coding upstream 15447 13369311 ~ 13373738 (+)
AMCG00002409 NA coding upstream 60786 13307997 ~ 13328399 (+)
AMCG00002408 NA coding upstream 84629 13271681 ~ 13304556 (+)
AMCG00002402 NA coding upstream 151780 13228527 ~ 13237405 (+)
AMCG00002414 NA coding downstream 24773 13430836 ~ 13439194 (+)
AMCG00002413 NA coding downstream 34874 13440937 ~ 13455498 (+)
AMCG00002418 erp44,LOC107593692,LOC107723539 coding downstream 84115 13490178 ~ 13511283 (+)
AMCG00002422 NA coding downstream 249176 13655239 ~ 13656558 (+)
AMCG00002423 frrs1l coding downstream 284957 13691020 ~ 13696602 (+)
G122929 NA non-coding upstream 83586 13304697 ~ 13305599 (+)
G122914 NA non-coding upstream 199323 13189282 ~ 13189862 (+)
G122911 NA non-coding upstream 200907 13187949 ~ 13188278 (+)
G122876 NA non-coding upstream 321550 13067265 ~ 13067635 (+)
G122868 NA non-coding upstream 336795 13052025 ~ 13052390 (+)
G123039 NA non-coding downstream 140001 13546064 ~ 13546300 (+)
G123041 NA non-coding downstream 160351 13566414 ~ 13570811 (+)
G123043 NA non-coding downstream 166456 13572519 ~ 13590681 (+)
G123169 NA non-coding downstream 958973 14365036 ~ 14366335 (+)
G123171 NA non-coding downstream 963030 14369093 ~ 14369913 (+)
AMCG00002393 NA other upstream 259488 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 318353 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 337214 13031759 ~ 13051971 (+)
G122746 NA other upstream 1248720 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 1373101 12011971 ~ 12016084 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 921569 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 3552098 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 3570225 16976288 ~ 16985906 (+)
G123807 NA other downstream 4509373 17915436 ~ 17984730 (+)
G123989 NA other downstream 5425951 18832014 ~ 18838531 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_01151083_01156699 FAM83HB coding CI01000054 null 1150724 ~ 1158172 (-)