CI01000054_01266491_01275814


Basic Information

Item Value
gene id CI01000054_01266491_01275814
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1265360 ~ 1275814 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_01266491_01275814.mRNA
GCATATCGACCAAGCGACGATGAGGGATCCGGAGATGAATTTTCCGATGATGAGGACTACTTTTCCGGATCTGGCTCTGGCTTTCCAGATATAAACGTTCGTCCGACTGCAGCAGGTGTGGCGGTCACTACAGAGGAGCCCCTCCCACTTTCTACCACACAGGCCACTGGCCCCGCCCCCTCGGCCTCCCCCGCCGCAGAGCCGAGTAGCCCACCTCCACCTGAGGTGGAGCGCGAGAGCGGCTTGGGACAAGATGTACTAGACAGAGACAGCAAACAGGAGCTTGAGGAGGAGGAAATGAGGACGACGAAGGAGCCGGATAGAGAACGAGAATCCGGGATGGAAATAAGGTTGGATGCTGACAAAGAGCGGGAACAAGAGACGTCGAAGGCTACGGTTGCACCCCGGCTGACTGACGTTCCTGTAGTGTTCATGGATTCATCCACCGCTCTGGGTGAGACTACAGTGACCACTGGTGACCTGGAGGAAGAGGAGGACGATCTGTACATTACTACAGAAACGATGATGTTTGAGCCGTCCAGCACACCAGAGACGACGACAGAGGACATCACAACCACTGAGGTTATTCCCACCACCGTTTCGTCCACCACTGCTAAGCCGTCTAGACCACGTCCTGCCCTGACCACTCCAAGCACCGCCCCCGTACGACCCCGGCAACCACAGACCACCCCGAGTAGAGCCGCCCCGCCTGAGAGCAGCACTCGCTCGCTGATGAGCTCCACAACACAGACACAAACACCAGATGAAACTGTAAATAATGAAGTTGCAGGACCAGGTCCAAGTGGTGATTTTGAAATCCACGAGAAGGAAGTTCAAGGCAACGAGGCCGGCCGAGGCAGAAAGGCTGGAGATCCAGATTTGACTGGAAACACAGTAGATGCTGCGGGAAGCTCCGCCGCTCAACTTCCACAGAAGAACATCCTCGAGAGGAAGGAAGTTTTGATAGCTGTTCTGATTGGAGGACTGTTTGCCTTTGTATTTGCAGACTTCCTGGTCATAGCGGTGATCGTCGGAGGTGTAGTCGGAGCACTCTTCGCTGCGTTCCTCGTAATGTTACTCGTCTACCGGATGAAAAAGAAAGATGAAGGCAGCTATACATTGGAGGAACCTAAACAAGCTACTGTCACCTACCAGAAACCGGACAAGCAGGAAGAATTCTACGCCTAACATCCATACATTCACCCTCCTCCATCTCTCCAACCTTGTCCCGTCTCTATCTGACCCCACTTCCTTTCTTTTCATCTTGCCCCTTTTCCTTTGATCCCTTTCTTCCCTCGTTTCCCCATGAGAGTGCCTCTCATTCCACGGACTCGGAACTTTCTTTTCCAAAAAAAAAAAAAAAAAAAAACTGAAAAAGATCAATGTAGAAACAAATGGAATTGGTTATGGGAGGGGCTTGGGTTAGGGGTGGGGTCAGTGAGGGCGGGGCTTGAGTCTACACATACACAGAGAAGAGAAACTTTTTTAAGAACATGTTATTATTGATATGTTTAGGATTGTTGTTCTATGGAATTATGACCTGAATCTTTTTTTTGTAAAGACACTCCGTTTCAGATGTGTTTCCTGCACAATATTACTCTCAGACTGAAAACATGGGAGCTAAAAAAAAAAAAAAAACAGCATGATAAAAATGAGGGAGAGGAAAAGAACACAGTTGGGGTCATGGAGGGATTGTGCAAGTCAGACAAGAGGGAGAAAAAGGAGCAGAAATAAGAGTTGCATGGCAGAAGTAGAGTCCGTACTCGAAATGCTCTTCTGTCACCAAGGTCAGTGATCCAGCGTTGTGTGGTGCCTTCCATTTCCCAGGTGCTAGAAACAGAGCTCGAGCAGAGCGAGTATGTGTGTGTGTGTGTGCTTGCGCATATATGTGCGATTGTATGTCAAAGGTGCCCTTGTGACCCCAGCCTAGACACACGCACATGCGCGCAGGCGCACACACGCAGCACGACTCCCTCTGCTGGCGAGATCACGTATCGGCACGGCGGTATTGTCCGTTTGGAGCAGGGAGCCCGAAACACGTACACAGCACACTAAAAACTCTGAAGGTTTGCTGTGAGGGAGCGCATGCATAGAATCAGAGGACTAGCCTCTCCTCTGCTCTGTATAAAAACTTTAGTAATCATTAGTAATAATCAATAATATATCAGCAGCTCTGAATGGAAGGAAATTGATGATCATAATATTCGTAGTGAAGGATATTATCTATTTAGCTGTGCAGTAAGGTTTTATCGGTGTAAATATCAATTCAACTTTTTTGTTTGTCATGCTTTTAACCATGCTATTGTAGTAAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_01266491_01275814.mRNA True 2319 mRNA 0.49 5 1265360 1275814

Neighbor

gene id symbol gene type direction distance location
CI01000054_01257527_01259314 NA coding downstream 6046 1257527 ~ 1259314 (-)
CI01000054_01246516_01250511 KLHL43 coding downstream 14111 1244881 ~ 1251249 (-)
CI01000054_01203148_01209012 PPT1 coding downstream 56225 1202905 ~ 1209135 (-)
CI01000054_01151083_01156699 FAM83HB coding downstream 107188 1150724 ~ 1158172 (-)
CI01000054_01115294_01116274 GPR3, GPR6, GPR186 coding downstream 148538 1114693 ~ 1116822 (-)
CI01000054_01294452_01302654 NA coding upstream 18390 1294204 ~ 1303671 (-)
CI01000054_01307641_01325658 PUM1, PUM1.S coding upstream 31149 1306963 ~ 1325658 (-)
CI01000054_01336032_01344581 NA coding upstream 60176 1335990 ~ 1344621 (-)
CI01000054_01349952_01353207 NA coding upstream 74039 1349853 ~ 1353521 (-)
CI01000054_01358110_01360645 FABP3 coding upstream 82188 1358002 ~ 1360975 (-)
G230231 NA non-coding downstream 21028 1243813 ~ 1244332 (-)
G230211 NA non-coding downstream 26313 1238344 ~ 1239047 (-)
G230241 NA non-coding downstream 27205 1235825 ~ 1238155 (-)
G230216 NA non-coding downstream 33909 1231158 ~ 1231451 (-)
G230178 NA non-coding downstream 35225 1185533 ~ 1230135 (-)
G230281 NA non-coding upstream 32372 1308186 ~ 1311785 (-)
G230286 NA non-coding upstream 101596 1377410 ~ 1377653 (-)
G230226 NA non-coding upstream 106504 1382318 ~ 1385445 (-)
CI01000054_01389675_01399257 NA non-coding upstream 113670 1389484 ~ 1399257 (-)
G230923 NA other upstream 1561423 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 1578327 2857402 ~ 2860573 (-)
G230908 NA other upstream 1781834 3057648 ~ 3063343 (-)
G231645 NA other upstream 2706033 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 3394337 4670151 ~ 4681361 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location