XLOC_009939 (zfat)


Basic Information

Item Value
gene id XLOC_009939
gene name zfat
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25342152 ~ 25360788 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019807
ATCCGCCATATTTGTTGTCGCAGATTCGACAGAAACCCCTGCAAGAAGTAATTTAAGCACAATGAATGCTTTAAAATGGCTCGATAGTTGTAAGAACAAAGATCAGAAATATTTCCGAGGTGTTTTTATGCATTACTGATTTAAAAAGAATGGATACAGCGCAAGCAGATGGTTCGTCAGTCTTCATGTGCAAAGGCTGCAACTTGTTCTCTCCCAAAAAAACACTGCTGCTCTCTCATGTTGTTGAGGCTCACTCCAGTGAAGGAGGAGATCCTGAGACCTTCATTATAGCACTTAAACCATTAACAACTCAGGAGACCCAGAATTCAGAAGTCGTTGTGAAAAGAAAGCGTGGAAGACCCAAAGGCTCCACTAAGAAAGCCCAACTAGAAAAGGTCCAGAAAAACACGTGCGGTCTGCAGGAAGAAGAGTCCAGTCAAAGCCAGCCGGCTACAGCAGCTAAAGAGCAGACAGAGGATGCCAATGATCTGGAGTGCAAGAAGTGCAATCGCATGTTCAGCAACCGGCGACAGATCTCCAAACACATTTGTTTTGTAGGACTGAAAGACGCTGCTGATGAAGAAGAGTTTAATGGTCATAATGTGGATGCAGGAAGAATCAGTGATGGAGAGGAAGACAGAGAGCGGACGCCAAAGAAAGCTCGAGCGATGCGGACAGATAAGGTGTCCAGTGCAAAGGACGCAGAATCAACAAGCGGCAACAAAAATCCTATTATTAGTGTAGTCCTTACCAGTCACGAGGCCATGCCTGGTGCCTCGAAGATTGTTCCCATTGAAGCAACTCCAGCTGAACCACCGTCTACTCAGACTGACGCCACTGCAGCTTCTCAGGAGGCAGCGATTAAAAGAGGATATCAAGAATATGCCATTCAGCAGGCTGCTTATGGAGAGCCTCTCAAATCAAACAGGTTAGGACAGACACAGCTTAAAATCTTCACTTGTGAATACTGCAATAAAGTCTTCAAGTTCAAACATTCACTGCAGGCTCACTTAAGAATCCACACCAACGAGAAACCCTTTAAGTGCATGCAGTGTGACTACGCCAGCGCCATAAAGGCTAATCTTAGTGTTCACATGCGCAAACACACCGGAGAGAAGTTCAGCTGCGACCTCTGCTCGTTTAACTGCCTCAGTAGAGGACACCTCAAAGTGCACGTAGAGCGAGTGCACAAGAAGATCAAGCAGCACTGCCGCTTCTGCAAGAAGAAATACTCAGACGTCAAAAACCTTCTGAAACACATCCGCGAGTCTCACGATATGAGCGACAAGAAAGTGCAGGAATCCTACGAAGAATACAGCCTTCAGACCAGGGAAGGCAAGAGGCAGCTTCTGTACAACTGTGAAATATGTGACCGGAAGTTTAAGAACGAGCTGGAGCGTGACCGTCACATGATGGTCCACGGCAGCAAGAGACCCTTCGGCTGCGAGTTATGCGATCACGGCTCCACAAAATACCAAGCCTTGCAAGCCCACATCCGAAAGCATCCCTTCATCTATGTGTGCGCCATTTGCCAGGAAAAGTTTGTCAGCTCTGTTCGGCTGAGGTTGCATCTCCGAGAGCTCCATCAGGAGTTGGATGAGCTTTCAGCGTTTGCAGACTCCATCAAATCCAGCTTTTGCTTGCTTAAGCCAGGTGATGACATTCAAAAGGACATGTTGAGTCAGGATGAGCTTAAAATCACAGAGGAGCTGTCGCAGCTCAATGCCCAGGAGCTGTTGACCACTGAAATGAGCTGTATGGCTCAAGAAGACCTTCAGTCTCAGTGCTCGGAGAGTTTAGTGGTGGAGTCGGACCTTCTCGCAGAGAACTCGCAAGAGATGGATACATGTGCAGTTGCGCAAACGCAAGAGATGGCCTGTGAAGATgccataaatacgcaaataactCAAGATGAACCACTTGAAGTGCAGAGCAGCGTGACAAAAGAAGAACAGACTCCTGTTCAGGAAACTGTTGCTGAAAATGCACAAACAGACCCAGAGCAGCTCCCAGAGGAGCATCAAAATGAGCTAATTACACAAGCTAATGCAGAACTACACATTTCAGAGCAAGAGGAAATATCTGCTTTCAAACAGATCCTAGAACAGATGCAGAAACGACAGCTTAACATGGAAGTGTTTGAACGGATTCGGAAAGTGTACGGAGATCTTGAATGTGAATACTGTGGTAAGCTTTTCTGGTACCAAGTGCACTACAATACACATGTGCGAACACACACGAGAGAGCACCTCCATTACTGTTCTCAGTGCAGTTATTCCTCCATCACGAAAAACTGCCTGAAGCGGCACGTCATTCAGAGGCATTCAGACATCCTGCTGAAGTGTCCCTCTGAAGGATGCCAATACTGCACACCTGATAAATACAAGCTTCAGGCTCATCTCAAAACCCACTCGGACATAGTCAAAAAGAGTTTTACGTGCCCAGTGTGTCAAGAATCGGTTCCTGAGGATAAAGTTAGAGCTCATACCAAGATCAATCATCCAGATGTGCCATTGAACGTCATCTCGGAGGCATTGGGGATACGCGTACATGTGAAAGGAGTGATCGGGAAACGAGCATCCAAATGCCCATATTGTGACTATTTCTTCACCAGGAATGGCGCTGACCTTCAGCAGCACATATGGGCTCATGAAGGACTTAAGCCATTTAAATGCTCACAATGTGATTATGCCTCAAGAAGCAAGAGCAACCTCAAAGCTCACATGAACAGACACAACACTGAGAAAACACATCTTTGTGACCTCTGTGGGAAAAAGTTCAAGTCCAAATGCACTCTGAAAAGCCATAAGCTTATGCACACAGCAGACGGAAAACAGTTCAGATGCACTGAGTGTGACTTCACTGCTGCTCTGAAGCCGCATCTCCTTCGTCACATGGAGCAACATGCCTCTTTTAAACCTTTCCGTTGCGCACACTGCCACTACTCATGCAACATTTCAGGCTCGCTGAAAAGACACTATAACAAGAAACATCCCAACATGCAGTACATCAATGCTGGAACAGGGGCATCTGCTTCTGAATCTGTGACAGAGCAAGGTGGAGTGAAATGTCCTGTATGCAATTATGTTTATGGCACTAAATGGGAAATGAATCGACACCTGAAGAGCAAACATGGACTGAAGGTGGTGGAGACTGACAGTCTGGGTCTCAATCAGTGGGAGGTAGTGGAGTCAGTGGAGGAGCCGACTATGCAGTACCTGCATATAGCTGAGACTGAAGATCCACAAGGAACTGAGACGGCTGTATCAGCTCTGCAGGACCTGCGATTCAATACACAAAATGGTGTTGTGTCTGCAGCAGCAGGAGACAGGCTAGATCCAGCATCAGTCAACATTCTCCAGCAGATCATCGAGCTGGGCTCTGAGAATCACGATGCCACTGTGGCCTCTGTGGTGGCAATGGCTCCTGGCACAGTCACTGTTGTAGAGCAGGTGGAGGAAGAGGAGCCTCAGAGCAATCATGCCATGATGATACAGGATGCACTGCAGCAGGCTACCGTGGGTCTGGGAGAAGAGCACCATCTAGTGGTGTCATCAGATGACATGGAAGGGATCAAAACAGTCACAGTTTACACGCAGGGAGAAGACGCTTCCCAGTTCATAGTCTACGTTCAGGAAGCAGTTCAGGAGGCTGTGCAGACTGAGGAGACCACGgtataaacattattaaagccATGCATA
>TCONS_00019808
AAGTCGTTGTGAAAAGAAAGCGTGGAAGACCCAAAGGCTCCACTAAGAAAGCCCAACTAGAAAAGGTCCAGAAAAACACGTGCGGTCTGCAGGAAGAAGAGTCCAGTCAAAGCCAGCCGGCTACAGCAGCTAAAGAGCAGACAGAGGATGCCAATGATCTGGAGTGCAAGAAGTGCAATCGCATGTTCAGCAACCGGCGACAGATCTCCAAACACATTTGTTTTGTAGGACTGAAAGACGCTGCTGATGAAGAAGAGTTTAATGGTCATAATGTGGATGCAGGAAGAATCAGTGATGGAGAGGAAGACAGAGAGCGGACGCCAAAGAAAGCTCGAGCGATGCGGACAGATAAGGTGTCCAGTGCAAAGGACGCAGAATCAACAAGCGGCAACAAAAATCCTATTATTAGTGTAGTCCTTACCAGTCACGAGGCCATGCCTGGTGAGATACACATGCTCTGTCTGTCAGGTGCTCTGAGCACTGAATGAAACACTGACACTGACTGTAAGTTTCTGTGTTTTGTCGTAGGTGCCTCGAAGATTGTTCCCATTGAAGCAACTCCAGCTGAACCACCGTCTACTCAGACTGACGCCACTGCAGCTTCTCAGGAGGCAGCGATTAAAAGAGGATATCAAGAATATGCCATTCAGCAGGCTGCTTATGGAGAGCCTCTCAAATCAAACAGGTTAGGACAGACACAGCTTAAAATCTTCACTTGTGAATACTGCAATAAAGTCTTCAAGTTCAAACATTCACTGCAGGCTCACTTAAGAATCCACACCAACGAGAAACCCTTTAAGTGCATGCAGTGTGACTACGCCAGCGCCATAAAGGCTAATCTTAGTGTTCACATGCGCAAACACACCGGAGAGAAGTTCAGCTGCGACCTCTGCTCGTTTAACTGCCTCAGTAGAGGACACCTCAAAGTGCACGTAGAGCGAGTGCACAAGAAGATCAAGCAGCACTGCCGCTTCTGCAAGAAGAAATACTCAGACGTCAAAAACCTTCTGAAACACATCCGCGAGTCTCACGATATGAGCGACAAGAAAGTGCAGGAATCCTACGAAGAATACAGCCTTCAGACCAGGGAAGGCAAGAGGCAGCTTCTGTACAACTGTGAAATATGTGACCGGAAGTTTAAGAACGAGCTGGAGCGTGACCGTCACATGATGGTCCACGGCAGCAAGAGACCCTTCGGCTGCGAGTTATGCGATCACGGCTCCACAAAATACCAAGCCTTGCAAGCCCACATCCGAAAGCATCCCTTCATCTATGTGTGCGCCATTTGCCAGGAAAAGTTTGTCAGCTCTGTTCGGCTGAGGTTGCATCTCCGAGAGCTCCATCAGGAGTTGGATGAGCTTTCAGCGTTTGCAGACTCCATCAAATCCAGCTTTTGCTTGCTTAAGCCAGGTGATGACATTCAAAAGGACATGTTGAGTCAGGATGAGCTTAAAATCACAGAGGAGCTGTCGCAGCTCAATGCCCAGGAGCTGTTGACCACTGAAATGAGCTGTATGGCTCAAGAAGACCTTCAGTCTCAGTGCTCGGAGAGTTTAGTGGTGGAGTCGGACCTTCTCGCAGAGAACTCGCAAGAGATGGATACATGTGCAGTTGCGCAAACGCAAGAGATGGCCTGTGAAGATgccataaatacgcaaataactCAAGATGAACCACTTGAAGTGCAGAGCAGCGTGACAAAAGAAGAACAGACTCCTGTTCAGGAAACTGTTGCTGAAAATGCACAAACAGACCCAGAGCAGCTCCCAGAGGAGCATCAAAATGAGCTAATTACACAAGCTAATGCAGAACTACACATTTCAGAGCAAGAGGAAATATCTGCTTTCAAACAGATCCTAGAACAGATGCAGAAACGACAGCTTAACATGGAAGTGTTTGAACGGATTCGGAAAGTGTACGGAGATCTTGAATGTGAATACTGTGGTAAGCTTTTCTGGTACCAAGTGCACTACAATACACATGTGCGAACACACACGAGAGAGCACCTCCATTACTGTTCTCAGTGCAGTTATTCCTCCATCACGAAAAACTGCCTGAAGCGGCACGTCATTCAGAGGCATTCAGACATCCTGCTGAAGTGTCCCTCTGAAGGATGCCAATACTGCACACCTGATAAATACAAGCTTCAGGCTCATCTCAAAACCCACTCGGACATAGTCAAAAAGAGTTTTACGTGCCCAGTGTGTCAAGAATCGGTTCCTGAGGATAAAGTTAGAGCTCATACCAAGATCAATCATCCAGATGTGCCATTGAACGTCATCTCGGAGGCATTGGGGATACGCGTACATGTGAAAGGAGTGATCGGGAAACGAGCATCCAAATGCCCATATTGTGACTATTTCTTCACCAGGAATGGCGCTGACCTTCAGCAGCACATATGGGCTCATGAAGGACTTAAGCCATTTAAATGCTCACAATGTGATTATGCCTCAAGAAGCAAGAGCAACCTCAAAGCTCACATGAACAGACACAACACTGAGAAAACACATCTTTGTGACCTCTGTGGGAAAAAGTTCAAGTCCAAATGCACTCTGAAAAGCCATAAGCTTATGCACACAGCAGACGGAAAACAGTTCAGATGCACTGAGTGTGACTTCACTGCTGCTCTGAAGCCGCATCTCCTTCGTCACATGGAGCAACATGCCTCTTTTAAACCTTTCCGTTGCGCACACTGCCACTACTCATGCAACATTTCAGGCTCGCTGAAAAGACACTATAACAAGAAACATCCCAACATGCAGTACATCAATGCTGGAACAGGGGCATCTGCTTCTGAATCTGTGACAGAGCAAGGTGGAGTGAAATGTCCTGTATGCAATTATGTTTATGGCACTAAATGGGAAATGAATCGACACCTGAAGAGCAAACATGGACTGAAGGTGGTGGAGACTGACAGTCTGGGTCTCAATCAGTGGGAGGTAGTGGAGTCAGTGGAGGAGCCGACTATGCAGTACCTGCATATAGCTGAGACTGAAGATCCACAAGGAACTGAGACGGCTGTATCAGCTCTGCAGGACCTGCGATTCAATACACAAAATGGTGTTGTGTCTGCAGCAGCAGGAGACAGGCTAGATCCAGCATCAGTCAACATTCTCCAGCAGATCATCGAGCTGGGCTCTGAGAATCACGATGCCACTGTGGCCTCTGTGGTGGCAATGGCTCCTGGCACAGTCACTGTTGTAGAGCAGGTGGAGGAAGAGGAGCCTCAGAGCAATCATGCCATGATGATACAGGATGCACTGCAGCAGGCTACCGTGGGTCTGGGAGAAGAGCACCATCTAGTGGTGTCATCAGATGACATGGAAGGGATCAAAACAGTCACAGTTTACACGCAGGGAGAAGACGCTTCCCAGTTCATAGTCTACGTTCAGGAAGCAGTTCAGGAGGCTGTGCAGACTGAGGAGACCACGgtataa

Function

symbol description
zfat Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in autoimmune thyroiditis. Orthologous to human ZFAT (zinc finger and AT-hook domain containing).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130204-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in autoimmune thyroiditis. Orthologous to human ZFAT (zinc finger and AT-hook domain containing).

Ensembl:

ensembl_id ENSDARG00000077987

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019807 False 3701 mRNA 0.47 16 25342152 25360788
TCONS_00019808 True 3437 mRNA 0.48 13 25343934 25360767

Neighbor

gene id symbol gene type direction distance location
XLOC_009938 dre-mir-30b coding upstream 341 25341724 ~ 25341811 (+)
XLOC_009937 dre-mir-30d coding upstream 609 25341416 ~ 25341543 (+)
XLOC_009936 dync1i1 coding upstream 4318 25316973 ~ 25337834 (+)
XLOC_009935 tbc1d31 coding upstream 27016 25296389 ~ 25315136 (+)
XLOC_009934 si:dkey-29h14.10 coding upstream 46967 25285998 ~ 25295185 (+)
XLOC_009940 jarid2a coding downstream 46233 25407021 ~ 25500729 (+)
XLOC_009941 mylipb coding downstream 175205 25535993 ~ 25548738 (+)
XLOC_009942 NA coding downstream 183638 25544426 ~ 25550654 (+)
XLOC_009943 NA coding downstream 191534 25552322 ~ 25579827 (+)
XLOC_009944 zhx2a coding downstream 247990 25608778 ~ 25643226 (+)
XLOC_009930 NA non-coding upstream 99842 25219435 ~ 25242310 (+)
XLOC_009931 NA non-coding upstream 107059 25233953 ~ 25235093 (+)
XLOC_009929 NA non-coding upstream 128174 25207618 ~ 25213978 (+)
XLOC_009948 NA non-coding downstream 469916 25830704 ~ 25831076 (+)
XLOC_009949 NA non-coding downstream 598108 25958896 ~ 25960158 (+)
XLOC_009954 NA non-coding downstream 713923 26074711 ~ 26080716 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05836494_05847115 NA coding CI01000027 null 5836494 ~ 5847601 (+)
bowfin (Amia calva) AMCG00021760 NA coding CM030130.1 CM030130.1 28767415 ~ 28804176 (+)