AMCG00001053


Basic Information

Item Value
gene id AMCG00001053
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 13029043 ~ 13029447 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001053
ATGAgctcttattttgtaaatcCATTTTATTCCAAATACAAGCCGGGGGAAACCATCGTCCCAGCGTACTACGACTCTCCCTTTGCACAAGATTTTTACGGGTACGATAACTTACAGAGACAGCAGCTCTTTACGACCCAGCCAGAGGCCGAGCTGCTACAATACCCCGACTGTAAATCGTTCGCTGGTAATACTGGCGAGGGACCAGAGCACTTAAATCAGGACTCGTCTCCTTCTCAGATGTTTCCCTGGATGAGACCTCAA

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001053 True 264 mRNA 0.48 2 13029043 13029447

Neighbor

gene id symbol gene type direction distance location
AMCG00001049 hoxd9,hoxd9aa coding upstream 5293 13009696 ~ 13023750 (+)
AMCG00001050 NA coding upstream 25008 13002935 ~ 13004035 (+)
AMCG00001052 NA coding upstream 30097 12997112 ~ 12998946 (+)
AMCG00001047 NA coding upstream 215676 12812414 ~ 12813367 (+)
AMCG00001037 NA coding upstream 321260 12697219 ~ 12707783 (+)
AMCG00001056 hoxd3,LOC107716912,LOC107600705,LOC107657387 coding downstream 14161 13043608 ~ 13063126 (+)
AMCG00001058 NA coding downstream 40520 13069967 ~ 13073290 (+)
AMCG00001054 mtx2,LOC107740585 coding downstream 47473 13076920 ~ 13095872 (+)
AMCG00001057 hnrnpa3,LOC107600707 coding downstream 172027 13201474 ~ 13211846 (+)
AMCG00001055 agps coding downstream 208776 13238223 ~ 13280730 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding upstream 188035 12837651 ~ 12841008 (+)
G128107 ola1,LOC107660044 non-coding upstream 352869 12638985 ~ 12676174 (+)
G128101 NA non-coding upstream 373871 12606039 ~ 12655172 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding upstream 488725 12540081 ~ 12540318 (+)
G127924 NA non-coding upstream 932180 12094141 ~ 12096863 (+)
G128255 NA non-coding downstream 328044 13357491 ~ 13382644 (+)
G128294 NA non-coding downstream 432219 13461666 ~ 13463482 (+)
G128402 NA non-coding downstream 1054839 14084286 ~ 14084930 (+)
G128662 NA non-coding downstream 1744171 14773618 ~ 14776723 (+)
G128663 NA non-coding downstream 1747412 14776859 ~ 14779441 (+)
AMCG00001022 NA other upstream 644001 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 1017618 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 2874856 10100283 ~ 10154187 (+)
G127134 NA other upstream 4408848 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 7563062 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 2120828 15150275 ~ 15184392 (+)
G128823 NA other downstream 2379665 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 2431085 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 4993613 18023060 ~ 18044251 (+)
G129453 NA other downstream 5516446 18545893 ~ 18547915 (+)

Expression


Co-expression Network