G128663


Basic Information

Item Value
gene id G128663
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14776859 ~ 14779441 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU161300
caaaacagcacacgtttctttttagttttaagGGGCCTACTCTTAAGATAACTGAACTTTTAGCAATGTTTGATTAGTGTATTTTGCAGAGGGagtgaaggaaattaaaattgatGGGCAGAGCTGAAGTAAACTCAATGACTCACCTAACAGCCATTAAGATTTACTTACACTAAAGGAggtaagaaaacacatttttgaggATAAACCAAATTACCTGTGTTGATGGCATAATcatttaaagtgaaatgttAAGGTGGAAGATATTtggggaaaatacaaaaaaaactgtcctCATATCTACTCCTCACACAGAAAAGCATTAatacaggtttttatttaaatgatatcACAAGTCATGAGAAAGTAACATATgtgttgaaaaatacattaaatatgtagcattttttataaactgtaaataattgaaaatattactCCAAACCCTAAAAACTAACTAAAAACTTGATTCATATTGATTCATGTTTTCTCTTTCCCACTTTGGCCTTAGAAGACAATGCTGATATTTGTAACATGAAGTCTCTCAAAAACAAACTACTGATTAATGCTGCTATAATGGGATTAAAGCGATTACTACACTAAAGGTagttattcaaaaatatatatatatatgtatatgtgtattatacTGTTCACTGACAGAGGTTTTTAAAAGTGCTTTCTGGTGCAAGATGATACTCAAATATATCATAGGAATTTGaactgcaatacaaatatacattaaaaagtaaaggaTTGTTCTAAATGGCATCTATAAATGTAGCATCCATTAAAAAGTTCCAATCACATAAGTTTGATCATTAtagaaatataatgtttaaaaccttacaaatgtgtttgttatgAGCAAGCTGAACATAtggttacattattattattattaatattatttgtaaagcAAGTCCAGGACACAGCAAAGCATCCACAGAGTAGGGTGGccaaattacaaatacagttcTTATGAACTTATATTggaactgaataaaaaaaaaattaaaaaaaaaaaaacccacatacatacacatacagtactgtgcaaaacttttaggcaggtgtaaaaaaatgctgtaaagtaagaatgctccttcaaagctcttttgaagaagccaGGACCATAGAcacagtggtcagccaaggaaacttactgcagcagatgaaagacacatcatgcttacttcccttcgcaatcggaagatgtccagcagtgccatcaactcagaattgacagaaaacagtgggaccctggtatacccatctactgtctggagaagtctggtcagaagtggccttcatggaagacctgcggccaaaaagccatacctccgacgtggcaacaaggccaagcgactcaactatgcatgaaaacacaggaactcgggtgtagaaaaatggcagcaggtgctctggactgatgagtcaatttgaaatacttggctgtagcagaaggcagtttattcactgaagggctggagagcagtacacaaatgagtgtctgcaggcaacagtgaagcatggtggaggttccttgcaagtttggggctgcatttctgcaaatggagtttggtcagaattaatggtctggtcaatgctgagaagtacaggcagctacatatccatcatgcaataccatcagggaggcgtctgattctgcagcatgacaacgaccccaaacatacagagaaagtcattaagaaatatcttcagtgtaaagaagaagaacctggaagtgatggtatggcccccacagagccctgatctcaacatcgagtctgtctgggattacatgaagagagagaagctactgaggctgcctaaatccacagaagaactgtgtttagttctccaagatgtttgggccaacctacctgccgagttccttcaaaaactgtgtgcaagtgtacctagaggAATTGCTGccgttttgaaggcaaatggtggtcacaccaaatattgacttgatgtagatttttcttctgttcactcactttgcatttagttcattgataaatataatctattaacatgtctatttttgaaagcattcttactttacagcattttttccacacctgcctaaaacttttgcacagtactgtacatacagctctggaaaaaatgaagatacCACTCCAAGTTCACAAATCAACATTAaatggtctcaattttttccagagctgtatatattaggTCCCCAACTTACAAACTTTCGAAGATATGAACAAAGtgctaactttttttttcttggaaaaCCCAGACATCAGGCCGATAAGTGTGGGCAGTAGTGTCTTCCGGGGCTTCagacccaaatgtttttggtttagCCCTGAACCTTTTGAtcgtaaaattattatttttaattggtaataatttaaaataaggtgctgtgatacctcatgaattaatatatgaataccacaggagtaacacatcaatacatcatgaacatcatctgagttctgatgtttaGCACATGAACCcgcacttaccctaaccctaaaacctaaccctgtcatacatgtgattaacatcagaattCAGATGAAGTGCACgacatgtgcatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161300 True 2583 lncRNA 0.37 1 14776859 14779441

Neighbor

gene id symbol gene type direction distance location
AMCG00001087 LOC106581929,LOC108435067 coding upstream 48672 14696640 ~ 14728187 (+)
AMCG00001086 NA coding upstream 153008 14619523 ~ 14623851 (+)
AMCG00001088 NA coding upstream 174519 14522664 ~ 14602340 (+)
AMCG00001090 NA coding upstream 279240 14477042 ~ 14497619 (+)
AMCG00001089 LOC107698997 coding upstream 303360 14404322 ~ 14473499 (+)
AMCG00001095 NA coding downstream 218576 14998017 ~ 15035581 (+)
AMCG00001094 calcrl,LOC103374150,LOC105905912,LOC104930425 coding downstream 281560 15061001 ~ 15070971 (+)
AMCG00001102 NA coding downstream 450430 15229871 ~ 15241090 (+)
AMCG00001101 NA coding downstream 482310 15261751 ~ 15264010 (+)
AMCG00001103 NA coding downstream 489811 15269252 ~ 15283103 (+)
G128662 NA non-coding upstream 136 14773618 ~ 14776723 (+)
G128402 NA non-coding upstream 691929 14084286 ~ 14084930 (+)
G128294 NA non-coding upstream 1313377 13461666 ~ 13463482 (+)
G128255 NA non-coding upstream 1394215 13357491 ~ 13382644 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding upstream 1935851 12837651 ~ 12841008 (+)
G128697 NA non-coding downstream 291632 15071073 ~ 15073902 (+)
G128747 NA non-coding downstream 430912 15210353 ~ 15211325 (+)
G128772 NA non-coding downstream 546553 15325994 ~ 15326220 (+)
G128815 NA non-coding downstream 579202 15358643 ~ 15359014 (+)
G128827 NA non-coding downstream 633339 15412780 ~ 15413107 (+)
AMCG00001022 NA other upstream 2391817 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 2765434 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 4622672 10100283 ~ 10154187 (+)
G127134 NA other upstream 6156664 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 9310878 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 370834 15150275 ~ 15184392 (+)
G128823 NA other downstream 629671 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 681091 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 3243619 18023060 ~ 18044251 (+)
G129453 NA other downstream 3766452 18545893 ~ 18547915 (+)

Expression


Co-expression Network