AMCG00001078


Basic Information

Item Value
gene id AMCG00001078
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14016104 ~ 14055778 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001078
ATGTCTGCAACGCCTCGCAGATCCGCCAATATCCCCCATGCCTGGGCGGAGAGCTTGGAGGAGTTGCATGAGACGCAACCGGTGTCTCCAGCCAGCACAGACAACCCAGgcaagaagcagcagcagcagcagcgatcGGTGTCCGTCCCGCAGCTGGGCACCGTGCAGACCTCACCCCCCAAAGCAGAGGACAGGGCAGGGGCTGGGAGATGCGTTCAGACCGAACCCGCCGGGCAGCCGATTGTCAGAGGAATCTTTCAGATAGAGAGAGCCAGCTGCGACGTAGTGCTGACGCCGGCAAGGCTGGCATGGGCTCCCATCCAGCCCGAGACCCCTGCAGGAGAATCCAAAGCAGGTGAACACTGTCAAGAAGAACATGTTGAGATGAAGGATGTTTTTGGTGTGAAACTAAAGCGCCGCCGTTCGGTCGGCCAGCAGACAGGAGGCACTCTCTTAGGATTCCGGAACAGACCGAAATCGCTGAAAGTGTTTGTGAACCCCAGCAGCCATAAAAAAGAAGCCCACAAGATCTACAAAGAGCAGGTCGCCCCTCTGTTTAAGCTTGCCGACATCAAGACTGACCTCACTATTACAGAGAGTAAGGGACACGCTTTTTCgattttgaaagaatgcagcCTGGATGACTATGACggTGTCGTCTGTGTCGGTGGAGATGGCTCCGCCAGTGAGGTGGCCTATGGATTACTTCTCCGGGCCCAGATGGATGCTGGGAGGGACACAGATTCCATCTTCACGCCTGTCAGAGCATCACTTCCTCTCGGCATAATACCAGCAGGCTCCACAGATGTGGTTGCGTGTTCTGTTCATGGAATAAGACACCCAGTAACTGCCGCCATGCACATAATCATGGGAAATAGCCAGTCCGTGGATGTTTGCACGTTTAGTTCCCAAAGCAGGCTGCTGCGCTTTGGCTTCTCAGCTATGTTTGGCTTTGGTGGGAGGACTTTGGCCTTGGCAGAAAAGTACCGTTGGATGCCTTCCAGCCAGCGAAGGGAATTTGCTGTAATCAAAACACTGGCAAATCTAAAGCCCGAAGACTGTGAATTATCATTCTTACCTCTGAAACAGCCTCCGCAAATAGCCAAGGAAAAGAGTAGAGATGACTGTGCAAAAGATGACGGTAGCGACGCAGAGGAAGAGGACCAGTGGCAGCTACTCCAGGGACTTTTTTTGAATATCAGCGTCATGGCTATCCCCTGCCTGTGCTCCATGGCACCGAGAGGTCTGGCACCCAATACTAGGCTGGACAATGGGAGTATGGCACTCATTGCGGTGCGAAACACTTCAAGAGCAGATTTCATTAAACACCTCAAGAGATATGGCAGCTTAAAGAATCAATTCAACTTTCCTTTCGTGGAGACCTACACAGTCCAGGCAGTGAAACTCAGACCACAGGCCAGGGGTGGATGGGGCGATGATGGGGCATCAGAGGAAAACGAGGAGTTTGAATCGAAGAACACGCCTATGATTTCCTCTGAGGGAACGTACCCCTGGAATATTGACGGGGATCTCATGGAAGTGACATCAGAGCTGTACATCAGAGTGCATCCCCAGCTCATCAGACTTTTTGGAGAACAAACAGAAGAAGCAGACGAATCCACTGTGAAATGCAACTGCCTTTAAAAGCTGCTGTCAGATCCGACCTAGAACCTGTCATTCCTCTGATCAGAACTGATTCCAGAGATGCTGGATGTAACCCCAGGGCCTAATTGAACAattgtttataatataattaaggGAATAATTCaaacattcctttttttatatatataaaaataattttatattctaAAAGCATAATCAACATACAGAAATGTTTGCATTACAGTACTGATGCAATATTGACTTTAAACCAAAGGAAAAATCAGCCAAGAAGacttttttgatttgttttgtttgtttttgtttttacaaatatttaaaacatttcacagcatcaaaagggaaaaaaaggaattcaTTAAAAGCTGTTCGTTGCTGTGGTCATTAACAGGAAATAGCTTTTATGTCTCAAAATCCTGTACACACAAACCTGCTTGaagtttttacatttctttacagTAAAACCTAGAAGCATTAAAGATAGTAGAGCATTAAGTCCTGATTTAGACTTACCGCTCGATTCTGCACTATTAAAAGCTCTGATCCACCAAATCTCATTACACCAAggctttagtttgtttttagatCACAGCATTTAGTAGGTTTATATGCCAGCGTCTAGAGTTGGAAGTCATTACAAGAATGACAAATAGGATTTTGGAGCGTTTCCAGCGCACAAAGAAAATATTAGTGTGAACCGTTAACTGAAGACCACAAAATTGTTAAAAGAGAAATGTCAACACTACCATGTAGAGAATTCAAGGAAGCTCCGGTGACGGGTTGGTTTTCTTCAAGTTAAACAATGTTGTACAGAAAAAAGATCTTTGTTTACATATAGTACTGCTGGCCTAATTGTTTAGCACTATGTTGTATATTACTTATATTTTCTGATAAACTACTATATAGATTTTAAGCAGTTTTTTCATATTTGACCAAATgctatattttgtatgtattttttctgaaatacaaaatgtgtggcACAAACATAACACAACATTACTACAGATTATTATTTGGGTATTCCTTTGATATATAtcagtttttaatattaaattataacatCATCTACTCTCCACTGTTTCTGTATACAGCTTGTAAGCATATTATTTTGTAAGGTGTTACAGGTGAATGCTGTAATAGTACaaaaaaccaaatacaaaaatcaggtgctccaatttaaaaatagttatccccccacacacacaccatattttcaatatgaaattattcaaagaaggttcagatttaattttgcaatttgtttgattatttaatacGAATTCAAGAACCTGTGCACAAataatgtgctttattttatattgaaataaatgggTGTTgacataaatattcatattgtttGTGCTTGATCTTTATTTATGATTTCATGATGTTTAAAAGGAATAAGGAGGACGAGTACTACGTATATGTATCCTGCAAAGTAtaaaccatttcattttcaagtgatCTCCAAGTTGTATTTTGGTCCTTAACTATTTATTagtaaaacatgaaatgtatatataaaatgttcagattcttaaatataaaacatacaacacATTACtaag

Function

GO:

id name namespace
GO:0042461 photoreceptor cell development biological_process
GO:0010842 retina layer formation biological_process
GO:0005829 cytosol cellular_component
GO:0005730 nucleolus cellular_component
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K19602 CERKL; ceramide kinase-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001078 True 3194 mRNA 0.42 13 14016104 14055778

Neighbor

gene id symbol gene type direction distance location
AMCG00001079 neurod1,ndf1 coding upstream 8772 14006307 ~ 14007332 (+)
AMCG00001074 pde1a coding upstream 80264 13925452 ~ 13935840 (+)
AMCG00001075 NA coding upstream 167242 13846399 ~ 13848862 (+)
AMCG00001070 NA coding upstream 230247 13774575 ~ 13785857 (+)
AMCG00001067 NA coding upstream 496635 13514684 ~ 13519469 (+)
AMCG00001082 cwc22,LOC107699014,LOC107676081,LOC107601622,LOC106586461 coding downstream 169952 14225730 ~ 14264053 (+)
AMCG00001085 znf385b,LOC107657507,LOC107699013,LOC107717003,LOC107601623 coding downstream 272522 14328300 ~ 14333025 (+)
AMCG00001083 znf385b coding downstream 287970 14343748 ~ 14351478 (+)
AMCG00001084 sestd1,LOC106582273,LOC107699012,LOC107657508,LOC106586460 coding downstream 316649 14372427 ~ 14399759 (+)
AMCG00001089 LOC107698997 coding downstream 348544 14404322 ~ 14473499 (+)
G128294 NA non-coding upstream 552622 13461666 ~ 13463482 (+)
G128255 NA non-coding upstream 633460 13357491 ~ 13382644 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding upstream 1175096 12837651 ~ 12841008 (+)
G128107 ola1,LOC107660044 non-coding upstream 1339930 12638985 ~ 12676174 (+)
G128101 NA non-coding upstream 1360932 12606039 ~ 12655172 (+)
G128402 NA non-coding downstream 28508 14084286 ~ 14084930 (+)
G128662 NA non-coding downstream 717840 14773618 ~ 14776723 (+)
G128663 NA non-coding downstream 721081 14776859 ~ 14779441 (+)
G128697 NA non-coding downstream 1015295 15071073 ~ 15073902 (+)
G128747 NA non-coding downstream 1154575 15210353 ~ 15211325 (+)
AMCG00001022 NA other upstream 1631062 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 2004679 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 3861917 10100283 ~ 10154187 (+)
G127134 NA other upstream 5395909 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 8550123 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 1094497 15150275 ~ 15184392 (+)
G128823 NA other downstream 1353334 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 1404754 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 3967282 18023060 ~ 18044251 (+)
G129453 NA other downstream 4490115 18545893 ~ 18547915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location