AMCG00021144


Basic Information

Item Value
gene id AMCG00021144
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6915817 ~ 6924589 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021144
ATGACATCGCAGTGGAGGTTTGAAGACTTCAGCGCGATcctcatgtggatgttacttctGACTGTCATTGAAGCAGTAAGATCAGACTCCCTGAAACAATCTGACTCGTTCTGTATGTTTCAAGAGAAGAAGTACAAAGTAGGAGAAAGATGGCACCCTTACTTGGAGCCGTACGGATTTGTCTACTGTATCAACTGTCTTTGCACTGAGAGTGGGAATGTGATGTGTAACCGGGTGAAGTGCCCATCTCTCCACTGTGCCAGCCCAGTCTCCGTGCCACAGCAGTGCTGCCACCGATGTCCCGATGTTTCCCCGGCTCCATTTGTGGCCAAACTGAATGGAAAGCCCTGCGACTACAATGGAGAGACATACCAGCACGGGGAAGTGTTTGTGGCTGAGGGTCTCTTCCCGAACAGGCAGCCCAACCAGTGTGCCCAGTGCACCTGCTCTGAAGGGAATGTGTACTGCCGGCTCAGGACCTGCCCGAAGCTGACCTGCTCTCTGCCCGTCTCTGTTCCTGAGTCCTGCTGCCAGGTTTGTAAAGATGACAGGGAGTCTTCATGGGATCTGCTTGACGGGGAAGCCCCTCGACAGCCGTCCAACAGAGAAGCCAGACACTCCTATCAGCGCACCCAGTACGAGGTGTTGCCTGCCAAGGCTCTGTCGAACCTCCCGCGCCTGCCCAACTTCAGAGCTCACCGGGGGCTGCTGTCAGAGCCCCAGCAGACCTCTGGGACCACCGTCCAGATCGTCatcaacaacaagaacaagcaCGGCAGAGTCTGTGTTTCCAATGGGAAGACGTACTCTCACGGGGAATCCTGGCACCCCGTGCTACGGTCCTTCGGTGTCATGGAGTGTGTCCTGTGTACTTGCAATATAACCAGACAGGAGTGCAAAAAAATCCACTGCCCAGACCAGTATCCCTGCAAATACCCCCAGAAGATCGACGGCAAATGCTGCAAGGTTTGTCAAGCAGAGGAAATGGATCTCAGCAGAGATGATGGGAAGGAGTTCTTCTGTGGCGAGGAGACTCTGCCAGTGTACGAAGCTGTACTCGCTGAAGAAGGGCGCATGGTTAGAAAAATTGCCCTGGAAACAGAGCAGCCAGCCGAAGCCGAGCTGCACATATGGACAATACTGAAAGGTCTTCTGCATAATTTCCACATTGAGAAGATCTCCAAGAAAGACTTCCACAAGCAGAGTGACTTCAAGCCTTTGACAAGAACCACACAAAGCCGGTGGAAGATTTTCCGTGAAGGAGAGATTCGGATCAGTCTGATGTGTGCCAGCCGGTCCTGTAGGACAGAGCTGGAAGACCTGGTGAAGGTTTTGTTTCTGGACAAGCCAGAGAAAGGACACTGCTGA

Function

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process

KEGG:

id description
K24520 CHRDL1; chordin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021144 True 1368 mRNA 0.53 11 6915817 6924589

Neighbor

gene id symbol gene type direction distance location
AMCG00021143 kif4a coding upstream 5403 6894003 ~ 6910414 (+)
AMCG00021142 NA coding upstream 104588 6789135 ~ 6811229 (+)
AMCG00021140 dcx coding upstream 191054 6716958 ~ 6724763 (+)
AMCG00021137 NA coding upstream 272755 6637721 ~ 6643062 (+)
AMCG00021138 LOC103395702,LOC102211599,LOC101478708,LOC102313148,LOC105902075 coding upstream 300173 6586140 ~ 6615644 (+)
AMCG00021146 NA coding downstream 32123 6956712 ~ 6957563 (+)
AMCG00021147 ammecr1,LOC106563512 coding downstream 54451 6979040 ~ 6991988 (+)
AMCG00021148 ammecr1,LOC108429437,LOC107713167,LOC107715796 coding downstream 101812 7026401 ~ 7040851 (+)
AMCG00021149 brcc3,LOC107661795,LOC107582010,LOC107569767 coding downstream 197985 7122574 ~ 7128057 (+)
AMCG00021151 NA coding downstream 204074 7128663 ~ 7146664 (+)
G83914 NA non-coding upstream 233900 6679203 ~ 6681917 (+)
G83904 NA non-coding upstream 252998 6660729 ~ 6662819 (+)
G83900 NA non-coding upstream 272294 6643182 ~ 6643523 (+)
G83752 NA non-coding upstream 2097488 4818097 ~ 4818329 (+)
G83741 NA non-coding upstream 2184873 4634736 ~ 4730944 (+)
G83976 NA non-coding downstream 126608 7051197 ~ 7056132 (+)
G83983 NA non-coding downstream 160629 7085218 ~ 7088239 (+)
G84049 NA non-coding downstream 472471 7397060 ~ 7398518 (+)
G84061 NA non-coding downstream 501342 7425931 ~ 7426347 (+)
G84078 NA non-coding downstream 586780 7511369 ~ 7511988 (+)
AMCG00021133 NA other upstream 369216 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 2682020 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 2786444 4127070 ~ 4129373 (+)
G83624 NA other upstream 3117034 3797841 ~ 3798783 (+)
AMCG00021076 NA other upstream 4685670 2209482 ~ 2230147 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 187408 7111997 ~ 7121237 (+)
AMCG00021180 NA other downstream 1115581 8040170 ~ 8043299 (+)
G84301 NA other downstream 1707138 8631727 ~ 8633410 (+)
G84425 NA other downstream 2491678 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 3545474 10470063 ~ 10719327 (+)

Expression


Co-expression Network