RNA id: AMCG00021144


Basic Information

Item Value
RNA id AMCG00021144
length 1368
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00021144
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6915817 ~ 6924589 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACATCGCAGTGGAGGTTTGAAGACTTCAGCGCGATcctcatgtggatgttacttctGACTGTCATTGAAGCAGTAAGATCAGACTCCCTGAAACAATCTGACTCGTTCTGTATGTTTCAAGAGAAGAAGTACAAAGTAGGAGAAAGATGGCACCCTTACTTGGAGCCGTACGGATTTGTCTACTGTATCAACTGTCTTTGCACTGAGAGTGGGAATGTGATGTGTAACCGGGTGAAGTGCCCATCTCTCCACTGTGCCAGCCCAGTCTCCGTGCCACAGCAGTGCTGCCACCGATGTCCCGATGTTTCCCCGGCTCCATTTGTGGCCAAACTGAATGGAAAGCCCTGCGACTACAATGGAGAGACATACCAGCACGGGGAAGTGTTTGTGGCTGAGGGTCTCTTCCCGAACAGGCAGCCCAACCAGTGTGCCCAGTGCACCTGCTCTGAAGGGAATGTGTACTGCCGGCTCAGGACCTGCCCGAAGCTGACCTGCTCTCTGCCCGTCTCTGTTCCTGAGTCCTGCTGCCAGGTTTGTAAAGATGACAGGGAGTCTTCATGGGATCTGCTTGACGGGGAAGCCCCTCGACAGCCGTCCAACAGAGAAGCCAGACACTCCTATCAGCGCACCCAGTACGAGGTGTTGCCTGCCAAGGCTCTGTCGAACCTCCCGCGCCTGCCCAACTTCAGAGCTCACCGGGGGCTGCTGTCAGAGCCCCAGCAGACCTCTGGGACCACCGTCCAGATCGTCatcaacaacaagaacaagcaCGGCAGAGTCTGTGTTTCCAATGGGAAGACGTACTCTCACGGGGAATCCTGGCACCCCGTGCTACGGTCCTTCGGTGTCATGGAGTGTGTCCTGTGTACTTGCAATATAACCAGACAGGAGTGCAAAAAAATCCACTGCCCAGACCAGTATCCCTGCAAATACCCCCAGAAGATCGACGGCAAATGCTGCAAGGTTTGTCAAGCAGAGGAAATGGATCTCAGCAGAGATGATGGGAAGGAGTTCTTCTGTGGCGAGGAGACTCTGCCAGTGTACGAAGCTGTACTCGCTGAAGAAGGGCGCATGGTTAGAAAAATTGCCCTGGAAACAGAGCAGCCAGCCGAAGCCGAGCTGCACATATGGACAATACTGAAAGGTCTTCTGCATAATTTCCACATTGAGAAGATCTCCAAGAAAGACTTCCACAAGCAGAGTGACTTCAAGCCTTTGACAAGAACCACACAAAGCCGGTGGAAGATTTTCCGTGAAGGAGAGATTCGGATCAGTCTGATGTGTGCCAGCCGGTCCTGTAGGACAGAGCTGGAAGACCTGGTGAAGGTTTTGTTTCTGGACAAGCCAGAGAAAGGACACTGCTGA

Function

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process

KEGG:

id description
K24520 CHRDL1; chordin-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104690 lncRNA upstream 233900 6679203 ~ 6681917 (+) True G83914
TU104679 lncRNA upstream 252998 6660729 ~ 6662819 (+) True G83904
TU104675 lncRNA upstream 272294 6643182 ~ 6643523 (+) True G83900
TU104599 lncRNA upstream 369216 6544531 ~ 6546601 (+) True AMCG00021133
TU104492 lncRNA upstream 2097488 4818097 ~ 4818329 (+) True G83752
TU104762 lncRNA downstream 126608 7051197 ~ 7056132 (+) True G83976
TU104771 lncRNA downstream 160629 7085218 ~ 7088239 (+) True G83983
TU104772 lncRNA downstream 160629 7085218 ~ 7086327 (+) False G83983
TU104815 lncRNA downstream 190792 7115381 ~ 7121237 (+) True AMCG00021150
TU104856 lncRNA downstream 472471 7397060 ~ 7398518 (+) True G84049
AMCG00021143 mRNA upstream 5403 6894003 ~ 6910414 (+) True AMCG00021143
AMCG00021142 mRNA upstream 104588 6789135 ~ 6811229 (+) True AMCG00021142
AMCG00021140 mRNA upstream 191054 6716958 ~ 6724763 (+) True AMCG00021140
AMCG00021137 mRNA upstream 272755 6637721 ~ 6643062 (+) True AMCG00021137
AMCG00021138 mRNA upstream 300173 6586140 ~ 6615644 (+) True AMCG00021138
AMCG00021146 mRNA downstream 32123 6956712 ~ 6957563 (+) True AMCG00021146
AMCG00021147 mRNA downstream 54451 6979040 ~ 6991988 (+) True AMCG00021147
AMCG00021148 mRNA downstream 101812 7026401 ~ 7040851 (+) True AMCG00021148
AMCG00021150 mRNA downstream 187408 7111997 ~ 7118948 (+) False AMCG00021150
AMCG00021149 mRNA downstream 197985 7122574 ~ 7128057 (+) True AMCG00021149
TU104395 other upstream 2682061 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 2786601 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 3117034 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 5989342 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 190792 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 190792 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 1707138 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 2491678 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 4038559 10963148 ~ 10987174 (+) True G84657

Expression Profile