RNA id: TU104679


Basic Information

Item Value
RNA id TU104679
length 1948
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G83904
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6660729 ~ 6662819 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTAagttgccatttatttatttccgaGCAGCGCTATTGACATGAAAATAAACCTCATTTatgacatttacaataaaaagaaaatagatcaAATCTGTCCAGTACCAAACAGTACAACATTTCACAATAGGTATCGGAGTAAGGAGATAACATCCAAAACTTGCACAGCAACTTTATTTACAATGACATTTGGAATATCATCATCAGTGACGTCTGAAATGGTTATCAATCAAATACGAACATAATGCAGTCATAatgattattttgtgtatgactacatttgaattaaatgcaattgGCAGGATACAAATCTATTTTGTAAAGGTTCTAGATTAACAACAATGGGAGTGTTACATGTTAGCGTTAAGTAAAGAGACTGAATCTAGTAGTGGGAATATTTTAACTGTTACTTGCTTTGATATTGTAGCagttatacaaaatattgtcagagttaaatactgttttaagaATAAATTACAGATGAAGTGTGTCAGATAAAGAATACATCAGTGAATGACAATAAATGATGCATGCAATACCGTACTATCAAACAAGGATTTCAAAATGATACTGTTGAAGCCTTTAGGGTGAATGACAGAAATGCATAGATGAACGGGAGATTAAATCAAGTAATAGTGATAATCTTTTGGGTCCTGTGAACATCTATTAACAAGGTGATATTTACTGACCATTTACTAATAAAAGGGAATAACTAATTATGAATGAAAACCAATGCCTATATGCATATTATCACTCCATTTTAAAACGTAAACCTTAACAACCCCACACTTAAGATCCATCAGTCAGACAACTTTTCCACTTCCAATATCAGGcaatgaaacactttttttcagCATATAAGGTATACACAAAGTAgagttcagaaaataaaataaaatacaaatataaatgccaCTCTTTTATCTTAGATAAGAGGATTTGAGGGAAGTGATATTccaatacacattttgtagttCAGTATGTTTCAGAAAGGAAAGAACAATAAGAAAAACGTTTTTAAAGAAATCCCAAACTTACAACAAAACTATCTTATTTCGTTGTTGTTGTGGAGAATCACTAGGGAACTGTAAAGATGGAAATCAGGTTGGAGGTTCCCTTAGaagaggctgctgtctgtcctCGTGGTTTTATTCCTCTCAGTTGCCCTCCATTTCTATCCTTGgcttgaggaagaaaaaaaaaagctgacaaTACCATCTTCTCCATCCAGCTGCTGCTAATATTTCATCTCTCCCACAAGTGCCTCGGCAGACCAGTTTAATAATAGTCCTGTTAACTATCTAATAATAGTCGAGGCTGACCTAGTAAAGCGCGTCTTCATACATGTCAGTCCGCAGACAGAACAGGATGCCCCCCCCCAGCATGAAGATGGTCGAACCCCAGCCCAGGCCGTAGCCCCAGTTGAACTCGTGGTAGGTCTGCAGGACTGTGCCGTCGATGAACTTGATGGGATACAGGACCAGAGCGCAGGCTTGCAGGACCACTGGGGAAGGAAAGAGAACTGAGCTCAGCGCACATTTATACTCAAATTCAGCAAAAGGCCGCACATAATCCCCGGACACGTTAACAGATTGCTTGAAACAGTGCTGCCAAGACTGCACTCTGGAGAGGAGTCTACGCGCTGGCCAAGGCTTCCCCTGCTCTCCCTGATTCCCTCTGAGGATATCGCCAGCTTATAACCTGCTGTGTTTCACAGGCTGTGATTGTGCTGGAAGTGTCATGTGCTGGACGTCAGACCGAAGCAGAACATGCTTTCTGACATCCTTTATATGTATGATATGAAGAACTGTTATATTTCAAACACAGTATAATGTGTAACATATCCATCATAAATGTCTCAAAGTGTTCCAGTAAAAGTCACTGATCGATTAACTGGGTGGATTCATTATTGCCTTGTCTGTGTGATTATATTTAAGGTAAACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104675 lncRNA upstream 17206 6643182 ~ 6643523 (+) True G83900
TU104599 lncRNA upstream 114128 6544531 ~ 6546601 (+) True AMCG00021133
TU104492 lncRNA upstream 1842400 4818097 ~ 4818329 (+) True G83752
TU104481 lncRNA upstream 1929785 4634736 ~ 4730944 (+) True G83741
TU104445 lncRNA upstream 2368365 4292126 ~ 4292364 (+) True G83716
TU104690 lncRNA downstream 16384 6679203 ~ 6681917 (+) True G83914
TU104762 lncRNA downstream 388378 7051197 ~ 7056132 (+) True G83976
TU104771 lncRNA downstream 422399 7085218 ~ 7088239 (+) True G83983
TU104772 lncRNA downstream 422399 7085218 ~ 7086327 (+) False G83983
TU104815 lncRNA downstream 452562 7115381 ~ 7121237 (+) True AMCG00021150
AMCG00021137 mRNA upstream 17667 6637721 ~ 6643062 (+) True AMCG00021137
AMCG00021138 mRNA upstream 45085 6586140 ~ 6615644 (+) True AMCG00021138
AMCG00021139 mRNA upstream 77528 6573176 ~ 6583201 (+) True AMCG00021139
AMCG00021131 mRNA upstream 88344 6549111 ~ 6572385 (+) True AMCG00021131
AMCG00021133 mRNA upstream 114497 6544234 ~ 6546232 (+) False AMCG00021133
AMCG00021140 mRNA downstream 54139 6716958 ~ 6724763 (+) True AMCG00021140
AMCG00021142 mRNA downstream 126316 6789135 ~ 6811229 (+) True AMCG00021142
AMCG00021143 mRNA downstream 231184 6894003 ~ 6910414 (+) True AMCG00021143
AMCG00021144 mRNA downstream 252998 6915817 ~ 6924589 (+) True AMCG00021144
AMCG00021146 mRNA downstream 293893 6956712 ~ 6957563 (+) True AMCG00021146
TU104395 other upstream 2426973 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 2531513 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 2861946 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 5734254 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 452562 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 452562 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 1968908 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 2753448 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 4300329 10963148 ~ 10987174 (+) True G84657

Expression Profile