LOC122357986 (LOC107749198,LOC107684185,LOC107596683)


Basic Information

Item Value
gene id LOC122357986
gene name LOC107749198,LOC107684185,LOC107596683
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 25837791 ~ 25841644 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043257697.1
ATCTGAAAGTCACACTGTTCACCGGCTGATCTTGTATTTTCACCCCGAAAGTTAGCTATCGTTTTATACGATATTCTATCGATAATTGGTTAATAACGGCTATCTTTCGTATGTAAGACGCGTTTTTCAGTgttatagatatacatatagatatggAAATGGTTTCAGTTAATTGCATCATGTACGAGAAAGTCatattcatttgtaaaaattagACACTAAGGATTTTCTATTATCCGAAAAAATAAGACATCTGGCTCGGAGTGATAAGCACAGTATTCCTCTGGAAAAGGACTGACAGGCATCATGTTAGGACACATAGCGAGAAGACTTGGCCGCATGCAACATGTTTCTGTTGGACTGAAGGGAGTCAGTCTTCAGCAGCTGCTTTCTAAAGAGACCCACAGACACCCGCAGTCCTCACTCGAGACCCACAGATCCATCTCGACGGTGTCACTATGGCCCTTCTCATCTCAGCCACGGGACTTCAGCCAGCCCAACTCCTCATGGAGTCCAGAGATGCGCAAGGTTTACGACCACTATAATGCTCTGTCTTTCCCTGACACCGAAAATGGTGAGGAAAAAAAGGGGCCGTGGAGGAAGTTGCCCAGCTACAACCGTTCCATTAAATACGCCACTGGCGGCATACACCTCAGCAAACTGATCCAGGCCAAAGCTCGACTTTTCACGAGAAATGTTAAAGAGCAGGGCGCGACGTTTGAGTATGTGGTGTTTGTCAACAAGGAGGAGAAGAGATGCGTTTGCGTGTTTCAGGCGGGACATTTACTAGAAGGTGCACCTGGGCATGTGCACGGCGGAGCCATAGCCACCATGATTGACACAGTGACGGGCACTCTTGCCGGTTTTCTCTCAGGACCAATAATGACCGCCAATCTCAGCATAGACTACCGCAGCCCGATGCCTCTGGATAGTGTGGTTTTAATCCACAGCTCTCTGGATCGAATAGAGAGGAGGAAAACGTACATCACTTGCAAAGTGACCAGCACTGATGAGTCAAAACTCTACACTGAGGCCACAGCTCTGTTTGTTTCAATAGGTGTGGGCCATTTATTTGGATCACGAAACTGAAAGCATCCTGGAGTCTCACCTGAGCGACAGGTGTGCGTCTGAGGTGGAGTGTGTGCGCAATGAACAAACAGATCAAGTTAGCGTTGTACCTCAGCTCTTTGAATGAGCTATTCAGAAATGTATGCATGTGATGCACTCATGTGGCTGCCTCATattttgttactttaaaaatCGAATTATATTAACCCTCTATATTTATtgatacagtatttacatttttgttgcaaaacaaaagttactctttttaattataatggTGACAGTAAAGTTCTTTAGTATTATGAGCATTATACAATGAAAAGCTCTATATTTTTAGCAGTACTGTATTGAATATTGTGTtaaatgcaatttctttttcagtttgttaTAAACGGAATGgtgtgtttaaattattttctcgCTAGggaataataacatatttataactTTCTTTATTAATGCCAATAAAGCCAGTAATTgaaatgtg

Function

NR:

description
PREDICTED: acyl-coenzyme A thioesterase THEM4-like

GO: NA

KEGG:

id description
K16339 THEM4, CTMP; acyl-coenzyme A thioesterase THEM4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043257697.1 True 1555 mRNA 0.42 6 25837791 25841644

Neighbor

gene id symbol gene type direction distance location
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding upstream 728224 25092111 ~ 25109567 (+)
sil1 LOC107740135,LOC107680960,LOC107742487,LOC107680335,LOC107580120 coding upstream 751232 25083816 ~ 25086559 (+)
spdl1 spdl1,zgc:171223,LOC107742485,LOC107680346 coding upstream 754332 25074604 ~ 25083459 (+)
gsr gsr,LOC107740139,LOC107593200,LOC107742476,LOC107680343,LOC107554844,LOC107680979 coding upstream 769364 25060085 ~ 25068427 (+)
zgc:101583 LOC107554838,LOC107680947,LOC107742473,LOC107554836,LOC107740185,LOC107680341 coding upstream 782867 25051819 ~ 25054924 (+)
LOC122357974 NA coding downstream 48428 25890072 ~ 25897581 (+)
xrcc1 xrcc1,LOC107737754,LOC107677402,LOC107565304 coding downstream 57472 25899116 ~ 25917595 (+)
drd2l drd2l,LOC107673327,LOC107738867,LOC107565303,LOC108431000,LOC107724766 coding downstream 77622 25919266 ~ 25936250 (+)
LOC122357978 LOC107565302 coding downstream 94990 25936634 ~ 25944086 (+)
LOC122357996 NA coding downstream 102958 25944602 ~ 25948014 (+)
LOC122357999 NA non-coding upstream 5546 25830215 ~ 25832245 (+)
G102284 gpc2,LOC107716510,LOC107665619,LOC107573391 non-coding upstream 37600 25799205 ~ 25800191 (+)
G102212 NA non-coding upstream 80298 25757175 ~ 25757493 (+)
G102209 NA non-coding upstream 85655 25751779 ~ 25752136 (+)
LOC122357405 NA non-coding upstream 116863 25717393 ~ 25720928 (+)
G102334 wdtc1,LOC107570846,LOC107673335 non-coding downstream 196932 26038576 ~ 26040075 (+)
G102335 NA non-coding downstream 205406 26047050 ~ 26056104 (+)
G102341 NA non-coding downstream 216519 26058163 ~ 26058439 (+)
G102344 NA non-coding downstream 243736 26085380 ~ 26090260 (+)
G102348 NA non-coding downstream 252201 26093845 ~ 26126060 (+)
LOC122358267 LOC107593202,LOC107740141,LOC107680337,LOC107554835,LOC108268827,LOC105904295 other upstream 778591 25057752 ~ 25059200 (+)
G102017 LOC107680957,LOC107593209,LOC107740154,LOC100534741 other upstream 1621028 24216243 ~ 24216763 (+)
tmem35 tmem35a,tmem35,LOC107680989,LOC107740187,LOC107724834,LOC107688707 other upstream 1748269 24086724 ~ 24089522 (+)
nitr14b NA other upstream 1865542 23970152 ~ 23972249 (+)
neil3 neil3 other upstream 3249258 22584190 ~ 22588533 (+)
G102332 wdtc1,LOC107738793,LOC107673335 other downstream 191335 26032979 ~ 26035638 (+)
gnrhr3 LOC107567517,LOC107673322,LOC108436550,LOC105908885 other downstream 326914 26168558 ~ 26175734 (+)
khdc4 kiaa0907,LOC107570803,LOC107565361,LOC107679549 other downstream 532689 26374333 ~ 26383784 (+)
LOC122357543 vps13b,LOC107570792,LOC107671824 other downstream 559883 26401527 ~ 26429629 (+)

Expression


Co-expression Network