sil1 (LOC107740135,LOC107680960,LOC107742487,LOC107680335,LOC107580120)


Basic Information

Item Value
gene id sil1
gene name LOC107740135,LOC107680960,LOC107742487,LOC107680335,LOC107580120
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 25083816 ~ 25086559 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043257885.1
TCCAGATGGACTGCGGAAATGCACGTGGTTTCTAGTTGTTTCTTTCTGGACGTTCAGTTAAACCCAGCATGTTAACAACAACGGCCAAATCCAGAATGAGTTAATTTAGTAACCTTACATCGCCCAGGTTTGGAAATGAATTTCGCTTTCACCTGGTCTCCTGGTCATGGATGACGTGTGATCGTTTATcagattatttttcataatttaccTTCGCGTGTCCAAATGATGATGACCAGACGTATAATAATGCAAAGGAAGTGCAAACTGGGATTGTCGATCGCTCTCTGGCTTGTCAGTGTTGGTCTCATATGTGCCCACAACGAGAAGTCACCAACAGCCCTGTCTATCAAAGAAGGCTCTGATGATCATAGCAAGGGTGAAGAAACATTATTAGAGGATGAGGATTCTGAGGATTTGGAGGTGTTTAGACCTACAGACAAGTGGCAAACTCTCAAACCAGGTCAAGCAGTTCCAGCAGGCTCCCATGTCAGATTAAATCTTCAGACAGGCCACAGAGAGGTCAAGATTGGAGAGGAGGCTGGTCTCAAATACAGGAGTGATGGAAATAGGCAAGGGACGATGAACATGCACGGCTCGTCATTCACAGCTGAGGAGTTGAAAGAGGCTTTGAAAAAGTTTAAAGAAGGAATGGATGATCTGGTGGACACGAAAGATGAGGATGCAGTGAGGGCTCAATTTCGCCCCATCGAAGAGCTGAAAAAAGACATGGAGGCACTTGACATGCTTGTGGAGACAGACGTTCAAGTTATGAGGAGGCTTTTAAACCAATTTAATAATACCAACAGCACAAACGAGGAAAAAATCACAGCTCTCCTTGACTTGGAGTACCTTGTGCACCAGGTAGATAATGCCCGAAATTTGGTGTCCATGGGAGGAATGCAATtggttataaatgttttaaacagcaCAGACATTCGTCTCCAAGAGAGTGCTGCCTTTGTGCTTGGATCTGCTGTTTCGAGTAATCCATCAGTGCAAGTTGAGGCAATAGAAGGAGGTGCGTTACAGAAACTGTTGACATTGCTTGCCACTCAGCGACCAATAACGGTAAAGAAAAAGGTGTTATTTGCCGTGGCCTCTCTCCTGCGTCACTTCCCGTTTGCTCAAAGTCACTTTTTGAAGCTTGGTGGTGTGCAGGTGCTCAGCGAACTGTTTCAAACACCGGGGACGGAACCTCTGCGCGTGAGAATCATAACGGTGCTCTACGATATGATCATTGAGAAgGAGTTGATATCTCAGGTGGGAATGGACATTATACCAGATTCGTCTCATCAGGAACGCTTGCGACAGTATGCTGAAGTTTCCCTCCTGCCCATGTTGGTGGAGCAGGGATGGTGCAGGCTGGTGCCTGAGCTTTTAGAGTCACCTGAGCATGACTACAGAGAGAAGGCTCTGCGCACTCTGCTTGCCATGATGGCTCAGTGTCAGACTCAATATAAACAGAATCCCGCATTGACAGCCTCTCTGAGTGAACTTCAAAAACAGTACCAAGAACTGGTGCTCACAGAACAGGACGTAGGAGAGCAGGACGGTTATTTTTCAGAGATACTGGCACTTGTGGACTCTATGGTGGTTAAAATGCGACAGGTATAAAttggtgctgctgctgctttcttTGGGACACAgtgaactaataaaataattgagtTGTAAATGA
>XM_043257886.1
GCTGCACTTGTCTGATTGGTTCACGTATTCAGTCCAGATGGACTGCGGAAATGCACGTGGTTTCTAGTTGTTTCTTTCTGGACGTTCAGTTAAACCCAGCATGTTAACAACGTTTGGAAATGAATTTCGCTTTCACCTGGTCTCCTGGTCATGGATGACGTGTGATCGTTTATcagattatttttcataatttaccTTCGCGTGTCCAAATGATGATGACCAGACGTATAATAATGCAAAGGAAGTGCAAACTGGGATTGTCGATCGCTCTCTGGCTTGTCAGTGTTGGTCTCATATGTGCCCACAACGAGAAGTCACCAACAGCCCTGTCTATCAAAGAAGGCTCTGATGATCATAGCAAGGGTGAAGAAACATTATTAGAGGATGAGGATTCTGAGGATTTGGAGGTGTTTAGACCTACAGACAAGTGGCAAACTCTCAAACCAGGTCAAGCAGTTCCAGCAGGCTCCCATGTCAGATTAAATCTTCAGACAGGCCACAGAGAGGTCAAGATTGGAGAGGAGGCTGGTCTCAAATACAGGAGTGATGGAAATAGGCAAGGGACGATGAACATGCACGGCTCGTCATTCACAGCTGAGGAGTTGAAAGAGGCTTTGAAAAAGTTTAAAGAAGGAATGGATGATCTGGTGGACACGAAAGATGAGGATGCAGTGAGGGCTCAATTTCGCCCCATCGAAGAGCTGAAAAAAGACATGGAGGCACTTGACATGCTTGTGGAGACAGACGTTCAAGTTATGAGGAGGCTTTTAAACCAATTTAATAATACCAACAGCACAAACGAGGAAAAAATCACAGCTCTCCTTGACTTGGAGTACCTTGTGCACCAGGTAGATAATGCCCGAAATTTGGTGTCCATGGGAGGAATGCAATtggttataaatgttttaaacagcaCAGACATTCGTCTCCAAGAGAGTGCTGCCTTTGTGCTTGGATCTGCTGTTTCGAGTAATCCATCAGTGCAAGTTGAGGCAATAGAAGGAGGTGCGTTACAGAAACTGTTGACATTGCTTGCCACTCAGCGACCAATAACGGTAAAGAAAAAGGTGTTATTTGCCGTGGCCTCTCTCCTGCGTCACTTCCCGTTTGCTCAAAGTCACTTTTTGAAGCTTGGTGGTGTGCAGGTGCTCAGCGAACTGTTTCAAACACCGGGGACGGAACCTCTGCGCGTGAGAATCATAACGGTGCTCTACGATATGATCATTGAGAAgGAGTTGATATCTCAGGTGGGAATGGACATTATACCAGATTCGTCTCATCAGGAACGCTTGCGACAGTATGCTGAAGTTTCCCTCCTGCCCATGTTGGTGGAGCAGGGATGGTGCAGGCTGGTGCCTGAGCTTTTAGAGTCACCTGAGCATGACTACAGAGAGAAGGCTCTGCGCACTCTGCTTGCCATGATGGCTCAGTGTCAGACTCAATATAAACAGAATCCCGCATTGACAGCCTCTCTGAGTGAACTTCAAAAACAGTACCAAGAACTGGTGCTCACAGAACAGGACGTAGGAGAGCAGGACGGTTATTTTTCAGAGATACTGGCACTTGTGGACTCTATGGTGGTTAAAATGCGACAGGTATAAAttggtgctgctgctgctttcttTGGGACACAgtgaactaataaaataattgagtTGTAAATGA

Function

NR:

description
PREDICTED: nucleotide exchange factor SIL1 isoform X1

GO: NA

KEGG:

id description
K14001 SIL1, SLS1; nucleotide exchange factor SIL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043257885.1 True 1681 mRNA 0.46 10 25083848 25086559
XM_043257886.1 False 1665 mRNA 0.46 10 25083816 25086559

Neighbor

gene id symbol gene type direction distance location
spdl1 spdl1,zgc:171223,LOC107742485,LOC107680346 coding upstream 357 25074604 ~ 25083459 (+)
gsr gsr,LOC107740139,LOC107593200,LOC107742476,LOC107680343,LOC107554844,LOC107680979 coding upstream 15389 25060085 ~ 25068427 (+)
zgc:101583 LOC107554838,LOC107680947,LOC107742473,LOC107554836,LOC107740185,LOC107680341 coding upstream 28892 25051819 ~ 25054924 (+)
btk btk,LOC107740143,LOC107593204,LOC107742472,LOC107680332 coding upstream 32402 25041424 ~ 25051414 (+)
gla gla coding upstream 43035 25036644 ~ 25040781 (+)
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding downstream 5552 25092111 ~ 25109567 (+)
LOC122357986 LOC107749198,LOC107684185,LOC107596683 coding downstream 751232 25837791 ~ 25841644 (+)
LOC122357974 NA coding downstream 803513 25890072 ~ 25897581 (+)
xrcc1 xrcc1,LOC107737754,LOC107677402,LOC107565304 coding downstream 812557 25899116 ~ 25917595 (+)
drd2l drd2l,LOC107673327,LOC107738867,LOC107565303,LOC108431000,LOC107724766 coding downstream 832707 25919266 ~ 25936250 (+)
G102069 NA non-coding upstream 505287 24578203 ~ 24578529 (+)
G102068 NA non-coding upstream 506310 24577188 ~ 24577506 (+)
G102019 NA non-coding upstream 813448 24270051 ~ 24270368 (+)
LOC122358238 NA non-coding upstream 1133251 23949157 ~ 23950565 (+)
LOC122357577 NA non-coding upstream 1725124 23267299 ~ 23358692 (+)
G102143 LOC107680971 non-coding downstream 3953 25090512 ~ 25693470 (+)
G102148 NA non-coding downstream 29311 25115870 ~ 25116759 (+)
G102164 NA non-coding downstream 356415 25442974 ~ 25465122 (+)
G102168 NA non-coding downstream 379761 25466320 ~ 25502146 (+)
LOC122357820 NA non-coding downstream 429783 25516342 ~ 25530371 (+)
LOC122358267 LOC107593202,LOC107740141,LOC107680337,LOC107554835,LOC108268827,LOC105904295 other upstream 24616 25057752 ~ 25059200 (+)
G102017 LOC107680957,LOC107593209,LOC107740154,LOC100534741 other upstream 867053 24216243 ~ 24216763 (+)
tmem35 tmem35a,tmem35,LOC107680989,LOC107740187,LOC107724834,LOC107688707 other upstream 994294 24086724 ~ 24089522 (+)
nitr14b NA other upstream 1111567 23970152 ~ 23972249 (+)
neil3 neil3 other upstream 2495283 22584190 ~ 22588533 (+)
G102332 wdtc1,LOC107738793,LOC107673335 other downstream 946420 26032979 ~ 26035638 (+)
gnrhr3 LOC107567517,LOC107673322,LOC108436550,LOC105908885 other downstream 1081999 26168558 ~ 26175734 (+)
khdc4 kiaa0907,LOC107570803,LOC107565361,LOC107679549 other downstream 1287774 26374333 ~ 26383784 (+)
LOC122357543 vps13b,LOC107570792,LOC107671824 other downstream 1314968 26401527 ~ 26429629 (+)

Expression


Co-expression Network