LOC122357820


Basic Information

Item Value
gene id LOC122357820
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 25516342 ~ 25530371 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252536.1
GAGCCAAAATGAGATATGGGGAGATAAAGATGCTATGTGCGCAACGGCTGCCATTTGCTGCAAGATGCCCCCGAGGGGAGCAGGTTGTGATAGAGAGCCACAAATTTACACTTCGAATGTTTTCCGAGTAAGTAAAACAACAGCCGTGTCTCGCGCAAGACAGGTTCAACCAGCCGTTCTGTTCCAACGCATGCTGGGAGTGAAGTCGAACGAGAATGATTCAAGCCCTGGACCCGTGCCAGCACCGATACCTCGGCTGTTTCCTGCGGTGCGGGCTCTGGGTGACCCCCGTGGCGGGCGTGTTAGAACATGCATGGAGATAGTTTCAGAGAGgGATGACCTTTAAAAATTCTCACGACACAGTCTAACTCTACTCTCCCAGTTCAGCCTCCTGAAGAAACACTGAAGGGACTAAAACATGTTTCTGCCCGAACAAAACTAAAGATTCACAGCTGTTGAGCTAGAACAAAAAAAGTTCCTCTATATAAAATCTTCTGTTCTGTTCCTAGTTCAGTCACTGTAGGCCAGTACAGAGCTCAAATatgtagaaataaaaagaaagagagaagaaataTTGCACCTTTAAGGTGAAATAGTGTTGTTTTGGACTGGCATGGTGGCAATAAGGACAGGTATGGTACGCTCGctcacatacacgcacacacaaaaagaaaccTGCAGATGGTGTGCCTCCCTGTAAAGAGACAGAGCGTGCAAGcgtgagaaaaaaactaaacagaggCAGTCAGCCACATGGAGaatgaaaaaacagaaaaatgagcAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252536.1 True 786 lncRNA 0.46 3 25516342 25530371

Neighbor

gene id symbol gene type direction distance location
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding upstream 406775 25092111 ~ 25109567 (+)
sil1 LOC107740135,LOC107680960,LOC107742487,LOC107680335,LOC107580120 coding upstream 429783 25083816 ~ 25086559 (+)
spdl1 spdl1,zgc:171223,LOC107742485,LOC107680346 coding upstream 432883 25074604 ~ 25083459 (+)
gsr gsr,LOC107740139,LOC107593200,LOC107742476,LOC107680343,LOC107554844,LOC107680979 coding upstream 447915 25060085 ~ 25068427 (+)
zgc:101583 LOC107554838,LOC107680947,LOC107742473,LOC107554836,LOC107740185,LOC107680341 coding upstream 461418 25051819 ~ 25054924 (+)
LOC122357986 LOC107749198,LOC107684185,LOC107596683 coding downstream 307420 25837791 ~ 25841644 (+)
LOC122357974 NA coding downstream 359701 25890072 ~ 25897581 (+)
xrcc1 xrcc1,LOC107737754,LOC107677402,LOC107565304 coding downstream 368745 25899116 ~ 25917595 (+)
drd2l drd2l,LOC107673327,LOC107738867,LOC107565303,LOC108431000,LOC107724766 coding downstream 388895 25919266 ~ 25936250 (+)
LOC122357978 LOC107565302 coding downstream 406263 25936634 ~ 25944086 (+)
G102168 NA non-coding upstream 14196 25466320 ~ 25502146 (+)
G102164 NA non-coding upstream 51220 25442974 ~ 25465122 (+)
G102148 NA non-coding upstream 399583 25115870 ~ 25116759 (+)
G102069 NA non-coding upstream 937813 24578203 ~ 24578529 (+)
G102068 NA non-coding upstream 938836 24577188 ~ 24577506 (+)
LOC122357405 NA non-coding downstream 187022 25717393 ~ 25720928 (+)
G102209 NA non-coding downstream 221408 25751779 ~ 25752136 (+)
G102212 NA non-coding downstream 226804 25757175 ~ 25757493 (+)
G102284 gpc2,LOC107716510,LOC107665619,LOC107573391 non-coding downstream 268834 25799205 ~ 25800191 (+)
G102286 NA non-coding downstream 273241 25803612 ~ 25894303 (+)
LOC122358267 LOC107593202,LOC107740141,LOC107680337,LOC107554835,LOC108268827,LOC105904295 other upstream 457142 25057752 ~ 25059200 (+)
G102017 LOC107680957,LOC107593209,LOC107740154,LOC100534741 other upstream 1299579 24216243 ~ 24216763 (+)
tmem35 tmem35a,tmem35,LOC107680989,LOC107740187,LOC107724834,LOC107688707 other upstream 1426820 24086724 ~ 24089522 (+)
nitr14b NA other upstream 1544093 23970152 ~ 23972249 (+)
neil3 neil3 other upstream 2927809 22584190 ~ 22588533 (+)
G102332 wdtc1,LOC107738793,LOC107673335 other downstream 502608 26032979 ~ 26035638 (+)
gnrhr3 LOC107567517,LOC107673322,LOC108436550,LOC105908885 other downstream 638187 26168558 ~ 26175734 (+)
khdc4 kiaa0907,LOC107570803,LOC107565361,LOC107679549 other downstream 843962 26374333 ~ 26383784 (+)
LOC122357543 vps13b,LOC107570792,LOC107671824 other downstream 871156 26401527 ~ 26429629 (+)

Expression


Co-expression Network