spdl1 (spdl1,zgc:171223,LOC107742485,LOC107680346)


Basic Information

Item Value
gene id spdl1
gene name spdl1,zgc:171223,LOC107742485,LOC107680346
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 25074604 ~ 25083459 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256966.1
GTGAACGGTAGGAAACCTCGTGTTTTCTCGCGATAGCTGATCGACGACCGCTGCAGAATTCAAACTAGCAGTTTGAAAGATCCCGAGCAAGAAAACGGTTGGGGAAGTTCATTGTTCAGACATAAGCTTGCATTCACCAACTTTTAAATCTAAAGATGTCAGATCTTGAGAATGAGATTAAAGTTTTGCGGCGGAAGGTTCAGGAAGGAGAAGAGGCTCTTCAGAGGGCTGGACAGTATGGACTTCAACTCTTGGATGACAAAATGGATCTGCACAGCCAGTTGGAGGAACAACGAATTGAGATGACCGGTGTCATTGAGGCCCTGGAACAAGAGAAATACTCCTTACAAAGGGAAGTTGAGTTAAAAGCCCGAATGCTGGAGAGTCTGCGATCTGAATTCGATCTTGTCAAAAACCAACAGAAGCATCACATGGAGCAGCAACAAACTTTGCTGGAGAGGAACCATGCTCTTGAGCTCAGTGACTTAAAGAATAAGTTGGAGAAAATGAAGACGAATTTAGAGGAGGCTCAACTTGCTGAGAGGCAGATGAGACACAAGCTGGACCAGCAGTCTGAAGCGCTGAACAGCAAAACCGAAGAACTTCGTGCCCTTACAGAACGTGCTCATGAAACAATGTCCTCGGAGATCCTTGAGCTACAAATGCAGATGGAGGATATGGAATCAACAATGGCGACTTTGGAGCAGGAGCTTCAGGAGGCACGATACAAAGAAGAGCAGTTACATTTGGCCAACACCGCGTTCCAGAGACAACTAGAGAGGCTCACAGAAgagaaggaagagagagagaaagaggcagTGTCCTGCTACAATGCTTTGGAGAAAGCTCGTGAAGCCAACCAAGACCTTCAGATCCAGCTGGAGCAGGTGTTACAGCAGGCACAAGATCCAAACAGCAAAGGCAATTCCTTGTTTTCTGAGGTAGAGGACAAAAGAGCAGAGATGGAGCGACAGCTGAACAGCATGAAACGACAGCATGAGTCTTTACACAAGCAGCATGCTCTTACCAAGCAACATATGCACCGCATGAAGATGCAGATAGCCACCCTTATGCAGCTCCAGGGCAACAGGGCTGACCCGGCACAGCTTGAACGACTGCAATTCATGttatctgaaaaaaacaatgagaTAGAAAGCCTGATGATTAAAGTAAGAGAACTGGAGAAAGAGAAGATGACCGTAAAAGACCAGCATCCAGCTGCCCCCTCTAAAGAGGGTGAACTTATGGATGAGACTTACTACACGGatctattaaaaatgcaactttcaAATTCAAAAAAGGATGCAGAGAAACTGAAGGATGAGCTGTCCATGGCAAGAATGAAAGCGCTCTCTGAAAGTCAAAGAGTGTTGGAGTTGGAGAGGAAACTCTATGGCACGGAGCAAGCACTTAAACAAAGGCACAGTGACAATATGAGGCTCCAAGTCAAGCTTGAAGAACTAAAGATGAAATATACACCtaatgAGGTGAACAAAGCACAAGTACAGAAACGCAGACGTGAGAAGTTTCCTGTACCTGTTCCAGAGGAGAAGTCGGCATCTAGCAAAGAGGAAACTGCAACCATGGATACTGAGCCAAGCAAGGGCTCAGGTGAAAAAACAGTGGAAGAAACCCTCAATCATCCCGTTGAGAAGCCAGTTGTGATCCCGTTACAGTCTGCACAAGCCACAGATCCCAACCCCCGTGAACTGCCCCGTGAAAGCAAGTCTGTTAGAATCTGCGAGGATCCCCCAGTCTGCATTCCCGATGCGCCCAGGTCAGTGCCAACCTCTGCATGCCAACCCTTCTCCTTTCTCCTGCGCTGTGTCAACTTTACAGTCTTTatcatcttcctcttcctggGTTTTATGAAAACACTCACTCCTCGACCGTCACTTCCTGCTCTACCGCTGCCTCTCAGGAATCCTGTAGTTCGAAGGAacttattttgacattttatccTCTTTTGATCTTGGTTTAGTGAAGATGAAATGAAAGGACTGCTAAAACTGTTTTGAAAcgtaatataaatacatatttgttaacattttgcACTTCAACTGTCAGACCTTTTGACAGTGACATTAAAATTTcaaagtttaaaggaatagttcacccaaaaatgaaaaatgaccatATAATTTACTCACGCAAGCCATCCTTTGTGTATACaactttcttctttttgatgaacacagttgagttttaaaaaaaattaaaagatccTGGCTCTTCCGAGCTTGGTAatggtggatagcggccattattttgatgttCCTTAAATTGCACATCTGTTGTAAAACTAAGCTATACACCTCCAGGTGTAacacgtcttctgaagcagataaaaaaaaatgtttgtctgaaagaagaaagttatatacaCTTAGGATGGCTTGGAGGTGAGTAtattatggggtaattttcatttttgggcgagctatttctttaagaaagcATTCCTGTCGCTGTAGAAGTAATGATAGTTATAATAACTTTCTGTGGCAGTCGCAATAATGGTGGTTGCAATTAACTTAATGCTGctttgacatttacattttagtacttAAGGTCTGTATTTTGAACCACCACAAACT
>XM_043256967.1
AAgggatttctttctttttttttttttaaaccgacTGTCGTCATGACGCACTGTTCTCTCCCGCGATGTCAGATCTTGAGAATGAGATTAAAGTTTTGCGGCGGAAGGTTCAGGAAGGAGAAGAGGCTCTTCAGAGGGCTGGACAGTATGGACTTCAACTCTTGGATGACAAAATGGATCTGCACAGCCAGTTGGAGGAACAACGAATTGAGATGACCGGTGTCATTGAGGCCCTGGAACAAGAGAAATACTCCTTACAAAGGGAAGTTGAGTTAAAAGCCCGAATGCTGGAGAGTCTGCGATCTGAATTCGATCTTGTCAAAAACCAACAGAAGCATCACATGGAGCAGCAACAAACTTTGCTGGAGAGGAACCATGCTCTTGAGCTCAGTGACTTAAAGAATAAGTTGGAGAAAATGAAGACGAATTTAGAGGAGGCTCAACTTGCTGAGAGGCAGATGAGACACAAGCTGGACCAGCAGTCTGAAGCGCTGAACAGCAAAACCGAAGAACTTCGTGCCCTTACAGAACGTGCTCATGAAACAATGTCCTCGGAGATCCTTGAGCTACAAATGCAGATGGAGGATATGGAATCAACAATGGCGACTTTGGAGCAGGAGCTTCAGGAGGCACGATACAAAGAAGAGCAGTTACATTTGGCCAACACCGCGTTCCAGAGACAACTAGAGAGGCTCACAGAAgagaaggaagagagagagaaagaggcagTGTCCTGCTACAATGCTTTGGAGAAAGCTCGTGAAGCCAACCAAGACCTTCAGATCCAGCTGGAGCAGGTGTTACAGCAGGCACAAGATCCAAACAGCAAAGGCAATTCCTTGTTTTCTGAGGTAGAGGACAAAAGAGCAGAGATGGAGCGACAGCTGAACAGCATGAAACGACAGCATGAGTCTTTACACAAGCAGCATGCTCTTACCAAGCAACATATGCACCGCATGAAGATGCAGATAGCCACCCTTATGCAGCTCCAGGGCAACAGGGCTGACCCGGCACAGCTTGAACGACTGCAATTCATGttatctgaaaaaaacaatgagaTAGAAAGCCTGATGATTAAAGTAAGAGAACTGGAGAAAGAGAAGATGACCGTAAAAGACCAGCATCCAGCTGCCCCCTCTAAAGAGGGTGAACTTATGGATGAGACTTACTACACGGatctattaaaaatgcaactttcaAATTCAAAAAAGGATGCAGAGAAACTGAAGGATGAGCTGTCCATGGCAAGAATGAAAGCGCTCTCTGAAAGTCAAAGAGTGTTGGAGTTGGAGAGGAAACTCTATGGCACGGAGCAAGCACTTAAACAAAGGCACAGTGACAATATGAGGCTCCAAGTCAAGCTTGAAGAACTAAAGATGAAATATACACCtaatgAGGTGAACAAAGCACAAGTACAGAAACGCAGACGTGAGAAGTTTCCTGTACCTGTTCCAGAGGAGAAGTCGGCATCTAGCAAAGAGGAAACTGCAACCATGGATACTGAGCCAAGCAAGGGCTCAGGTGAAAAAACAGTGGAAGAAACCCTCAATCATCCCGTTGAGAAGCCAGTTGTGATCCCGTTACAGTCTGCACAAGCCACAGATCCCAACCCCCGTGAACTGCCCCGTGAAAGCAAGTCTGTTAGAATCTGCGAGGATCCCCCAGTCTGCATTCCCGATGCGCCCAGGTCAGTGCCAACCTCTGCATGCCAACCCTTCTCCTTTCTCCTGCGCTGTGTCAACTTTACAGTCTTTatcatcttcctcttcctggGTTTTATGAAAACACTCACTCCTCGACCGTCACTTCCTGCTCTACCGCTGCCTCTCAGGAATCCTGTAGTTCGAAGGAacttattttgacattttatccTCTTTTGATCTTGGTTTAGTGAAGATGAAATGAAAGGACTGCTAAAACTGTTTTGAAAcgtaatataaatacatatttgttaacattttgcACTTCAACTGTCAGACCTTTTGACAGTGACATTAAAATTTcaaagtttaaaggaatagttcacccaaaaatgaaaaatgaccatATAATTTACTCACGCAAGCCATCCTTTGTGTATACaactttcttctttttgatgaacacagttgagttttaaaaaaaattaaaagatccTGGCTCTTCCGAGCTTGGTAatggtggatagcggccattattttgatgttCCTTAAATTGCACATCTGTTGTAAAACTAAGCTATACACCTCCAGGTGTAacacgtcttctgaagcagataaaaaaaaatgtttgtctgaaagaagaaagttatatacaCTTAGGATGGCTTGGAGGTGAGTAtattatggggtaattttcatttttgggcgagctatttctttaagaaagcATTCCTGTCGCTGTAGAAGTAATGATAGTTATAATAACTTTCTGTGGCAGTCGCAATAATGGTGGTTGCAATTAACTTAATGCTGctttgacatttacattttagtacttAAGGTCTGTATTTTGAACCACCACAAACT
>XM_043256968.1
GTGAACGGTAGGAAACCTCGTGTTTTCTCGCGATAGCTGATCGACGACCGCTGCAGAATTCAAACTAGCAGTTTGAAAGATCCCGAGCAAGAAAACGGTTGGGGAAGTTCATTGTTCAGACATAAGCTTGCATTCACCAACTTTTAAATCTAAAGATGTCAGATCTTGAGAATGAGATTAAAGTTTTGCGGCGGAAGGTTCAGGAAGGAGAAGAGGCTCTTCAGAGGGCTGGACAGTATGGACTTCAACTCTTGGATGACAAAATGGATCTGCACAGCCAGTTGGAGGAACAACGAATTGAGATGACCGGTGTCATTGAGGCCCTGGAACAAGAGAAATACTCCTTACAAAGGGAAGTTGAGTTAAAAGCCCGAATGCTGGAGAGTCTGCGATCTGAATTCGATCTTGTCAAAAACCAACAGAAGCATCACATGGAGCAGCAACAAACTTTGCTGGAGAGGAACCATGCTCTTGAGCTCAGTGACTTAAAGAATAAGTTGGAGAAAATGAAGACGAATTTAGAGGAGGCTCAACTTGCTGAGAGGCAGATGAGACACAAGCTGGACCAGCAGTCTGAAGCGCTGAACAGCAAAACCGAAGAACTTCGTGCCCTTACAGAACGTGCTCATGAAACAATGTCCTCGGAGATCCTTGAGCTACAAATGCAGATGGAGGATATGGAATCAACAATGGCGACTTTGGAGCAGGAGCTTCAGGAGGCACGATACAAAGAAGAGCAGTTACATTTGGCCAACACCGCGTTCCAGAGACAACTAGAGAGGCTCACAGAAgagaaggaagagagagagaaagaggcagTGTCCTGCTACAATGCTTTGGAGAAAGCTCGTGAAGCCAACCAAGACCTTCAGATCCAGCTGGAGCAGGTGTTACAGCAGGCACAAGATCCAAACAGCAAAGGCAATTCCTTGTTTTCTGAGGTAGAGGACAAAAGAGCAGAGATGGAGCGACAGCTGAACAGCATGAAACGACAGCATGAGTCTTTACACAAGCAGCATGCTCTTACCAAGCAACATATGCACCGCATGAAGATGCAGATAGCCACCCTTATGCAGCTCCAGGGCAACAGGGCTGACCCGGCACAGCTTGAACGACTGCAATTCATGttatctgaaaaaaacaatgagaTAGAAAGCCTGATGATTAAAGTAAGAGAACTGGAGAAAGAGAAGATGACCGTAAAAGACCAGCATCCAGCTGCCCCCTCTAAAGAGGGTGAACTTATGGATGAGACTTACTACACGGatctattaaaaatgcaactttcaAATTCAAAAAAGGATGCAGAGAAACTGAAGGATGAGCTGTCCATGGCAAGAATGAAAGCGCTCTCTGAAAGTCAAAGAGTGTTGGAGTTGGAGAGGAAACTCTATGGCACGGAGCAAGCACTTAAACAAAGGCACAGTGACAATATGAGGCTCCAAGTCAAGCTTGAAGAACTAAAGATGAAATATACACCtaatgAGGTGAACAAAGCACAAGTACAGAAACGCAGACGTGAGAAGTTTCCTGTACCTGTTCCAGAGGAGAAGTCGGCATCTAGCAAAGAGGAAACTGCAACCATGGATACTGAGCCAAGCAAGGGCTCAGGTGAAAAAACAGTGGAAGAAACCCTCAATCATCCCGTTGAGAAGCCAGTTGTGATCCCGTTACAGTCTGCACAAGCCACAGATCCCAACCCCCGTGAACTGCCCCGTGAAAGCAAGTCTGTTAGAATCTGCGAGGATCCCCCAGTCTGCATTCCCGATGCGCCCAGGTCTCCTGTAAGTGACTCCAAAAGCAAGAATGATGATCAAACTCATCAAAGCAGTGAAGAGGAGGAGAATTGGAGAActgaaaagaagaggaaaaagtaCCAACAGCCCACTCATGTTAACTCTGAAAAAACTATGGCAAACGAGTGTGCTCAGCAGTAGTTTAGCTAGCTTAAAATGTGAATCCTGTATcatttgtcatatatatataaaaaaagattgtgtatgtattttacagtgtatgatTTACGtcattaattgttttttgacTTGACCTTTCACATGTACATGGTTTGTAGAACagtttacttttataaatgtattaatattctttgtattatagataattatttgtttaaataaaaaaaataacttgtgTACTTA

Function

symbol description
spdl1 Predicted to enable kinetochore binding activity. Predicted to be involved in establishment of mitotic spindle orientation; mitotic metaphase plate congression; and protein localization to kinetochore. Predicted to act upstream of or within cell division and mitotic spindle assembly checkpoint signaling. Predicted to be located in nucleus. Predicted to be part of outer kinetochore. Predicted to be active in spindle pole. Is expressed in brain. Orthologous to human SPDL1 (spindle apparatus coiled-coil protein 1).

NR:

description
PREDICTED: protein Spindly-like, partial

GO:

id name namespace
GO:0034501 protein localization to kinetochore biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0007080 mitotic metaphase plate congression biological_process
GO:0000922 spindle pole cellular_component
GO:0000940 condensed chromosome outer kinetochore cellular_component
GO:0005634 nucleus cellular_component
GO:0043515 kinetochore binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256966.1 True 2597 mRNA 0.43 11 25076811 25083060
XM_043256967.1 False 2507 mRNA 0.43 11 25074604 25083060
XM_043256968.1 False 2159 mRNA 0.44 12 25076811 25083459

Neighbor

gene id symbol gene type direction distance location
gsr gsr,LOC107740139,LOC107593200,LOC107742476,LOC107680343,LOC107554844,LOC107680979 coding upstream 6177 25060085 ~ 25068427 (+)
zgc:101583 LOC107554838,LOC107680947,LOC107742473,LOC107554836,LOC107740185,LOC107680341 coding upstream 19680 25051819 ~ 25054924 (+)
btk btk,LOC107740143,LOC107593204,LOC107742472,LOC107680332 coding upstream 23190 25041424 ~ 25051414 (+)
gla gla coding upstream 33823 25036644 ~ 25040781 (+)
glra4a glra4a,LOC107593205,LOC107724829,LOC100711741,LOC101466695,LOC107680943,LOC106604454 coding upstream 50692 24989885 ~ 25023912 (+)
sil1 LOC107740135,LOC107680960,LOC107742487,LOC107680335,LOC107580120 coding downstream 357 25083816 ~ 25086559 (+)
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding downstream 8652 25092111 ~ 25109567 (+)
LOC122357986 LOC107749198,LOC107684185,LOC107596683 coding downstream 754332 25837791 ~ 25841644 (+)
LOC122357974 NA coding downstream 806613 25890072 ~ 25897581 (+)
xrcc1 xrcc1,LOC107737754,LOC107677402,LOC107565304 coding downstream 815657 25899116 ~ 25917595 (+)
G102069 NA non-coding upstream 496075 24578203 ~ 24578529 (+)
G102068 NA non-coding upstream 497098 24577188 ~ 24577506 (+)
G102019 NA non-coding upstream 804236 24270051 ~ 24270368 (+)
LOC122358238 NA non-coding upstream 1124039 23949157 ~ 23950565 (+)
LOC122357577 NA non-coding upstream 1715912 23267299 ~ 23358692 (+)
G102143 LOC107680971 non-coding downstream 7053 25090512 ~ 25693470 (+)
G102148 NA non-coding downstream 32411 25115870 ~ 25116759 (+)
G102164 NA non-coding downstream 359515 25442974 ~ 25465122 (+)
G102168 NA non-coding downstream 382861 25466320 ~ 25502146 (+)
LOC122357820 NA non-coding downstream 432883 25516342 ~ 25530371 (+)
LOC122358267 LOC107593202,LOC107740141,LOC107680337,LOC107554835,LOC108268827,LOC105904295 other upstream 15404 25057752 ~ 25059200 (+)
G102017 LOC107680957,LOC107593209,LOC107740154,LOC100534741 other upstream 857841 24216243 ~ 24216763 (+)
tmem35 tmem35a,tmem35,LOC107680989,LOC107740187,LOC107724834,LOC107688707 other upstream 985082 24086724 ~ 24089522 (+)
nitr14b NA other upstream 1102355 23970152 ~ 23972249 (+)
neil3 neil3 other upstream 2486071 22584190 ~ 22588533 (+)
G102332 wdtc1,LOC107738793,LOC107673335 other downstream 949520 26032979 ~ 26035638 (+)
gnrhr3 LOC107567517,LOC107673322,LOC108436550,LOC105908885 other downstream 1085099 26168558 ~ 26175734 (+)
khdc4 kiaa0907,LOC107570803,LOC107565361,LOC107679549 other downstream 1290874 26374333 ~ 26383784 (+)
LOC122357543 vps13b,LOC107570792,LOC107671824 other downstream 1318068 26401527 ~ 26429629 (+)

Expression


Co-expression Network