RNA id: XM_043256968.1


Basic Information

Item Value
RNA id XM_043256968.1
length 2159
RNA type mRNA
GC content 0.44
exon number 12
gene id spdl1
representative False

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 25074604 ~ 25083459 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAACGGTAGGAAACCTCGTGTTTTCTCGCGATAGCTGATCGACGACCGCTGCAGAATTCAAACTAGCAGTTTGAAAGATCCCGAGCAAGAAAACGGTTGGGGAAGTTCATTGTTCAGACATAAGCTTGCATTCACCAACTTTTAAATCTAAAGATGTCAGATCTTGAGAATGAGATTAAAGTTTTGCGGCGGAAGGTTCAGGAAGGAGAAGAGGCTCTTCAGAGGGCTGGACAGTATGGACTTCAACTCTTGGATGACAAAATGGATCTGCACAGCCAGTTGGAGGAACAACGAATTGAGATGACCGGTGTCATTGAGGCCCTGGAACAAGAGAAATACTCCTTACAAAGGGAAGTTGAGTTAAAAGCCCGAATGCTGGAGAGTCTGCGATCTGAATTCGATCTTGTCAAAAACCAACAGAAGCATCACATGGAGCAGCAACAAACTTTGCTGGAGAGGAACCATGCTCTTGAGCTCAGTGACTTAAAGAATAAGTTGGAGAAAATGAAGACGAATTTAGAGGAGGCTCAACTTGCTGAGAGGCAGATGAGACACAAGCTGGACCAGCAGTCTGAAGCGCTGAACAGCAAAACCGAAGAACTTCGTGCCCTTACAGAACGTGCTCATGAAACAATGTCCTCGGAGATCCTTGAGCTACAAATGCAGATGGAGGATATGGAATCAACAATGGCGACTTTGGAGCAGGAGCTTCAGGAGGCACGATACAAAGAAGAGCAGTTACATTTGGCCAACACCGCGTTCCAGAGACAACTAGAGAGGCTCACAGAAgagaaggaagagagagagaaagaggcagTGTCCTGCTACAATGCTTTGGAGAAAGCTCGTGAAGCCAACCAAGACCTTCAGATCCAGCTGGAGCAGGTGTTACAGCAGGCACAAGATCCAAACAGCAAAGGCAATTCCTTGTTTTCTGAGGTAGAGGACAAAAGAGCAGAGATGGAGCGACAGCTGAACAGCATGAAACGACAGCATGAGTCTTTACACAAGCAGCATGCTCTTACCAAGCAACATATGCACCGCATGAAGATGCAGATAGCCACCCTTATGCAGCTCCAGGGCAACAGGGCTGACCCGGCACAGCTTGAACGACTGCAATTCATGttatctgaaaaaaacaatgagaTAGAAAGCCTGATGATTAAAGTAAGAGAACTGGAGAAAGAGAAGATGACCGTAAAAGACCAGCATCCAGCTGCCCCCTCTAAAGAGGGTGAACTTATGGATGAGACTTACTACACGGatctattaaaaatgcaactttcaAATTCAAAAAAGGATGCAGAGAAACTGAAGGATGAGCTGTCCATGGCAAGAATGAAAGCGCTCTCTGAAAGTCAAAGAGTGTTGGAGTTGGAGAGGAAACTCTATGGCACGGAGCAAGCACTTAAACAAAGGCACAGTGACAATATGAGGCTCCAAGTCAAGCTTGAAGAACTAAAGATGAAATATACACCtaatgAGGTGAACAAAGCACAAGTACAGAAACGCAGACGTGAGAAGTTTCCTGTACCTGTTCCAGAGGAGAAGTCGGCATCTAGCAAAGAGGAAACTGCAACCATGGATACTGAGCCAAGCAAGGGCTCAGGTGAAAAAACAGTGGAAGAAACCCTCAATCATCCCGTTGAGAAGCCAGTTGTGATCCCGTTACAGTCTGCACAAGCCACAGATCCCAACCCCCGTGAACTGCCCCGTGAAAGCAAGTCTGTTAGAATCTGCGAGGATCCCCCAGTCTGCATTCCCGATGCGCCCAGGTCTCCTGTAAGTGACTCCAAAAGCAAGAATGATGATCAAACTCATCAAAGCAGTGAAGAGGAGGAGAATTGGAGAActgaaaagaagaggaaaaagtaCCAACAGCCCACTCATGTTAACTCTGAAAAAACTATGGCAAACGAGTGTGCTCAGCAGTAGTTTAGCTAGCTTAAAATGTGAATCCTGTATcatttgtcatatatatataaaaaaagattgtgtatgtattttacagtgtatgatTTACGtcattaattgttttttgacTTGACCTTTCACATGTACATGGTTTGTAGAACagtttacttttataaatgtattaatattctttgtattatagataattatttgtttaaataaaaaaaataacttgtgTACTTA

Function

GO:

id name namespace
GO:0034501 protein localization to kinetochore biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0007080 mitotic metaphase plate congression biological_process
GO:0000922 spindle pole cellular_component
GO:0000940 condensed chromosome outer kinetochore cellular_component
GO:0005634 nucleus cellular_component
GO:0043515 kinetochore binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150994 lncRNA upstream 17624 25057831 ~ 25059187 (+) False LOC122358267
TU150901 lncRNA upstream 498282 24578203 ~ 24578529 (+) True G102069
TU150900 lncRNA upstream 499305 24577188 ~ 24577506 (+) True G102068
TU150837 lncRNA upstream 806443 24270051 ~ 24270368 (+) True G102019
TU150701 lncRNA upstream 1105076 23970291 ~ 23971735 (+) False nitr14b
TU151009 lncRNA downstream 7053 25090512 ~ 25145183 (+) False G102143
TU151022 lncRNA downstream 32411 25115870 ~ 25116759 (+) True G102148
TU151013 lncRNA downstream 61079 25144538 ~ 25693470 (+) True G102143
TU151043 lncRNA downstream 359515 25442974 ~ 25465122 (+) True G102164
TU151047 lncRNA downstream 382861 25466320 ~ 25468302 (+) True G102168
XM_043257835.1 mRNA upstream 8384 25060085 ~ 25068427 (+) True gsr
XM_043257833.1 mRNA upstream 8384 25060537 ~ 25068427 (+) False gsr
XM_043258068.1 mRNA upstream 17611 25057752 ~ 25059200 (+) True LOC122358267
XM_043258069.1 mRNA upstream 17611 25057803 ~ 25059200 (+) False LOC122358267
XM_043256845.1 mRNA upstream 21887 25051934 ~ 25054924 (+) True zgc:101583
XM_043257886.1 mRNA downstream 357 25083816 ~ 25086559 (+) False sil1
XM_043257885.1 mRNA downstream 389 25083848 ~ 25086559 (+) True sil1
XM_043256869.1 mRNA downstream 8652 25092111 ~ 25109567 (+) True csnk1a1
XM_043256871.1 mRNA downstream 8652 25092111 ~ 25109567 (+) False csnk1a1
XM_043256870.1 mRNA downstream 8652 25092111 ~ 25104430 (+) False csnk1a1
unassigned_transcript_1961 other upstream 848563 24228177 ~ 24228248 (+) True trnae-uuc_32
TU150835 other upstream 860048 24216243 ~ 24216763 (+) True G102017
TU150815 other upstream 987289 24086724 ~ 24089522 (+) True tmem35
unassigned_transcript_1960 other upstream 1025036 24051703 ~ 24051775 (+) True trnav-uac_6
XR_006252530.1 other upstream 2769360 22282292 ~ 22307451 (+) False gria2b
TU151254 other downstream 949520 26032979 ~ 26035638 (+) True G102332
TU151318 other downstream 1085099 26168558 ~ 26171402 (+) False gnrhr3
XR_006252567.1 other downstream 1290874 26374333 ~ 26383634 (+) False khdc4

Expression Profile