RNA id: XM_043257885.1


Basic Information

Item Value
RNA id XM_043257885.1
length 1681
RNA type mRNA
GC content 0.46
exon number 10
gene id sil1
representative True

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 25083816 ~ 25086559 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCAGATGGACTGCGGAAATGCACGTGGTTTCTAGTTGTTTCTTTCTGGACGTTCAGTTAAACCCAGCATGTTAACAACAACGGCCAAATCCAGAATGAGTTAATTTAGTAACCTTACATCGCCCAGGTTTGGAAATGAATTTCGCTTTCACCTGGTCTCCTGGTCATGGATGACGTGTGATCGTTTATcagattatttttcataatttaccTTCGCGTGTCCAAATGATGATGACCAGACGTATAATAATGCAAAGGAAGTGCAAACTGGGATTGTCGATCGCTCTCTGGCTTGTCAGTGTTGGTCTCATATGTGCCCACAACGAGAAGTCACCAACAGCCCTGTCTATCAAAGAAGGCTCTGATGATCATAGCAAGGGTGAAGAAACATTATTAGAGGATGAGGATTCTGAGGATTTGGAGGTGTTTAGACCTACAGACAAGTGGCAAACTCTCAAACCAGGTCAAGCAGTTCCAGCAGGCTCCCATGTCAGATTAAATCTTCAGACAGGCCACAGAGAGGTCAAGATTGGAGAGGAGGCTGGTCTCAAATACAGGAGTGATGGAAATAGGCAAGGGACGATGAACATGCACGGCTCGTCATTCACAGCTGAGGAGTTGAAAGAGGCTTTGAAAAAGTTTAAAGAAGGAATGGATGATCTGGTGGACACGAAAGATGAGGATGCAGTGAGGGCTCAATTTCGCCCCATCGAAGAGCTGAAAAAAGACATGGAGGCACTTGACATGCTTGTGGAGACAGACGTTCAAGTTATGAGGAGGCTTTTAAACCAATTTAATAATACCAACAGCACAAACGAGGAAAAAATCACAGCTCTCCTTGACTTGGAGTACCTTGTGCACCAGGTAGATAATGCCCGAAATTTGGTGTCCATGGGAGGAATGCAATtggttataaatgttttaaacagcaCAGACATTCGTCTCCAAGAGAGTGCTGCCTTTGTGCTTGGATCTGCTGTTTCGAGTAATCCATCAGTGCAAGTTGAGGCAATAGAAGGAGGTGCGTTACAGAAACTGTTGACATTGCTTGCCACTCAGCGACCAATAACGGTAAAGAAAAAGGTGTTATTTGCCGTGGCCTCTCTCCTGCGTCACTTCCCGTTTGCTCAAAGTCACTTTTTGAAGCTTGGTGGTGTGCAGGTGCTCAGCGAACTGTTTCAAACACCGGGGACGGAACCTCTGCGCGTGAGAATCATAACGGTGCTCTACGATATGATCATTGAGAAgGAGTTGATATCTCAGGTGGGAATGGACATTATACCAGATTCGTCTCATCAGGAACGCTTGCGACAGTATGCTGAAGTTTCCCTCCTGCCCATGTTGGTGGAGCAGGGATGGTGCAGGCTGGTGCCTGAGCTTTTAGAGTCACCTGAGCATGACTACAGAGAGAAGGCTCTGCGCACTCTGCTTGCCATGATGGCTCAGTGTCAGACTCAATATAAACAGAATCCCGCATTGACAGCCTCTCTGAGTGAACTTCAAAAACAGTACCAAGAACTGGTGCTCACAGAACAGGACGTAGGAGAGCAGGACGGTTATTTTTCAGAGATACTGGCACTTGTGGACTCTATGGTGGTTAAAATGCGACAGGTATAAAttggtgctgctgctgctttcttTGGGACACAgtgaactaataaaataattgagtTGTAAATGA

Function

GO: NA

KEGG:

id description
K14001 SIL1, SLS1; nucleotide exchange factor SIL1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150994 lncRNA upstream 24661 25057831 ~ 25059187 (+) False LOC122358267
TU150901 lncRNA upstream 505319 24578203 ~ 24578529 (+) True G102069
TU150900 lncRNA upstream 506342 24577188 ~ 24577506 (+) True G102068
TU150837 lncRNA upstream 813480 24270051 ~ 24270368 (+) True G102019
TU150701 lncRNA upstream 1112113 23970291 ~ 23971735 (+) False nitr14b
TU151009 lncRNA downstream 3953 25090512 ~ 25145183 (+) False G102143
TU151022 lncRNA downstream 29311 25115870 ~ 25116759 (+) True G102148
TU151013 lncRNA downstream 57979 25144538 ~ 25693470 (+) True G102143
TU151043 lncRNA downstream 356415 25442974 ~ 25465122 (+) True G102164
TU151047 lncRNA downstream 379761 25466320 ~ 25468302 (+) True G102168
XM_043256968.1 mRNA upstream 389 25076811 ~ 25083459 (+) False spdl1
XM_043256967.1 mRNA upstream 788 25074604 ~ 25083060 (+) False spdl1
XM_043256966.1 mRNA upstream 788 25076811 ~ 25083060 (+) True spdl1
XM_043257835.1 mRNA upstream 15421 25060085 ~ 25068427 (+) True gsr
XM_043257833.1 mRNA upstream 15421 25060537 ~ 25068427 (+) False gsr
XM_043256869.1 mRNA downstream 5552 25092111 ~ 25109567 (+) True csnk1a1
XM_043256871.1 mRNA downstream 5552 25092111 ~ 25109567 (+) False csnk1a1
XM_043256870.1 mRNA downstream 5552 25092111 ~ 25104430 (+) False csnk1a1
XM_043256872.1 mRNA downstream 5553 25092112 ~ 25109567 (+) False csnk1a1
XM_043257697.1 mRNA downstream 751232 25837791 ~ 25841644 (+) True LOC122357986
unassigned_transcript_1961 other upstream 855600 24228177 ~ 24228248 (+) True trnae-uuc_32
TU150835 other upstream 867085 24216243 ~ 24216763 (+) True G102017
TU150815 other upstream 994326 24086724 ~ 24089522 (+) True tmem35
unassigned_transcript_1960 other upstream 1032073 24051703 ~ 24051775 (+) True trnav-uac_6
XR_006252530.1 other upstream 2776397 22282292 ~ 22307451 (+) False gria2b
TU151254 other downstream 946420 26032979 ~ 26035638 (+) True G102332
TU151318 other downstream 1081999 26168558 ~ 26171402 (+) False gnrhr3
XR_006252567.1 other downstream 1287774 26374333 ~ 26383634 (+) False khdc4

Expression Profile