RNA id: XM_043259150.1


Basic Information

Item Value
RNA id XM_043259150.1
length 5181
RNA type mRNA
GC content 0.44
exon number 24
gene id pik3cb
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 4044747 ~ 4076667 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTAGTCTGCGTGGAGATATTTACACGACGTTTAACACATACTCGACTGCATAAGCTGCCGTCCCATCACGTTCTGTCTATTTCCGGGTGAAATCACGGCTCAGAAGTTCGGGTGTTTGTGGGCTGTTGACAAATAGCGGTTACGTGTGGAAAGGGAAGGGTGTACATAgcaaacagggaaaaaaaatcgaGCGATTGCTCGCTTGTGTCTCTCagcctgctgaaaaaaaagcaggaaGCGGACCAGAGCTGTTCACCTGCACCGTGTCGAATGAAAGCCTGCATTGGACATTTAAAGGGGAAGAAGGCTCAGCTTTTGCCTGCTTACTGTGATTGAAAGCTGACCGATGTTTGGAGTACAACCCGAGACGCGGACAgttaacttttaacatttagttCCGTGAATTAAACAGAACTGGCGTTGGACATTCCGTTCCAGTTGGAATAATCTGTTCTAAAGATGCAGCATCCTCTTTATCCCATCATGGAGCTGGCTGAGAAATAAGAGACTGCAGAGACAGCAGGTTCCCATGGTTTGGCTCCAGTGTGCTGTCTGCCATGCCTCCCGCCAAGACAGATCAGCTGGACTTGTGGGCGGAATCAGGGCTAGATGGAGACGACCAGGTTATGGTCGATTTCCTGTTGCCCACAGGAATATACATCCAGATGGAGGTTCCTCGCGAGAGCACCATTCAACACATCAAACTGCTGTTATGGAAGGAGGCACAGACGTACCCTCTCTTCTCATTGCTGGGGGAGATGGAGGGTCACATGTTCGAGTGTGTGAACCAGGCAGCAGTGCACGAAGAGCTGGAGGATGAAACCAGGCGGCTATGTGACGTTCGACCATTCCTGCCTGTCCTCAAACTAATCACACGCAACTGTGGACGTGCAGAGCGCATACTAGATTCTAAAATCGGAGTGCTCATTGGGAAAGGTCTTCATGAATTGGATGCCCTGCAAGACCAGCAAGTTAAAGACTTTCGGTCCAAAATGAAGCGAATCAGTGAAGAGAAGATGCAGCGTATGCAGCTAATGTCGTTGGGGGAGTGGCTTCGGAGCTGTTATTCTACTCAGCTGGAGACAGGGTCATTGGAAAATGTGATTGACAAGCATGAGGGCGTAATCAAAATCACCATGCACTATGACCAGTCACAGGACACAGCAAGCCTGAAAGTTTCTTTGCATTGTACAGGAACTGAACTAATGGATCAAGCTCTCAAGAAATGGCAGACCACTCACGGCCCAGAGGAAGACATTGGTATCCGTAGTGATTATGTGCTGCGTGTCAGTGGTAGACTTGAGTTCCTGTTTGAAGATCATCCTCTTAATCAGTGCAAAtACATTAGGGATTGTTTGTTAGCCAATGAGAGCCCTCATCTGACACTAGTTCACTGTGACATTGTGAAGGCAATGTTTGAAAAGGAAATCAGTACAATTGGATCAGTGCTTGCTCGGAAAACTTCTAACCCTCCTCTACCACTGCCCCCAAAGAAGAGATCACCAACGCAATTACATACATGTGTTTGGAAGGTTCATTCTCTGTTTAGAATTAATCTTGTGAAAGGTAATAAGGTGAACGCTGAAGATGCTGCTAAGATCCAGGTTCGAGCAGGGCTCTTTCATGGTACAGAACTATTGTGTAAGACAGCAGTCAGCAGTGAGAGCAGCAGTCGATCTGAGCATGTGTGGAACAAAACACTGGAATTTGACATCGCTGTTTGTGACCTGCCTCGAATGGCCCGCCTCTGTTTTGCCATTTACGCTGTAATGGACAAAGTGAAGAAACAGAGGTCAACAAAGAACACACACCTCAACAAATACCAGACTATCCGCAAGGCGGGGAAAGTGCACTACCCAATAGCATGGGTTAACACAATGGTGTTTGACTACAGAGGGCAGCTGAAGACTGGTGACATTATCCTCCACTGCTGGTCCTCTTTTCCTgATGAGCTGGAAGAGATGTTGAACCCTATTGGGACAATTCAGACCAATCCATACACAGAGAATGCCACAGAATTACATATAAGCTTTCCAGAATACTCAACGCAACCAGTTGTATTTCCTGCTTTTGACAAAATCCTGGAAAAAGCTGCAGAAATAGCTGGAGCCAGTGATATCGTGACTATGGGTCGTGGGGGTAAGAAGTTTTACATAGAGCTAAAGGAGATCATGGAGAGGGATCCTCTCTCTCAGCTTTGTGAGAATGAGAAAGATCTGATATGGACGCTTCGCTACGACTGCAGAGAAAACTTTCCTCAATCTCTCCCCAAACTGCTGCTGTCTGTGAAATGGAGCAAACATGAAGACATGGCTCAGCTACAGGCTTTGCTGCAGATTTGGCCCAAACTAAGCCCTCGGGATGCCTTAGAACTTCTGGATTTCAACTACCCTGACCAATATGTCCGAGAATTTGCGGTCAACTGCCTTAGAGATATGAGtgatGATGAGCTGTTGCAGTATTTACTGCAGCTCGTGCAGGTGTTGCGCTACGAGCCGTACTATGATTGCGCCCTCAGCCGCTTCCTCCTGGAGCGCGCTCAGTCCAGTCGCAAGATTGGCCACTTCCTCTTCTGGCATCTCAGGTCTGAAATGTACATGCCAGCCGTGTCAGTTCATTTTGCTCTGATTTTGGAAGCATACTGCCGAGGCTGCATCCCACACATAGAAGTTCTCAAAAAacaggttgAAGCTCTCAGTAAGCTGAAAGCTGTAAATGAGCTGATTAAATTGGGCACCATAAAAACTAAGACAAAACAAGCTCATCTTAAAGAGGCCATGATGACTTGCCTTAGACAGACGGGATTCATCGAAACACTTTCTGACCTGCATTCACCTCTCAACCCCAACACATTGCTCGCTGGAGTACACGTGGAGAGGTGCAAGTACATGGACTCTAAAATGAAACCTCTGTGGATTGTTTACAACAACAAGCTGTTAGGAGGAGACACAGTGGGCATCATCTTCAAAAATGGAGATGACCTGCGGCAAGACATGTTGACTTTACAGATCTTGAGGTTGATGGATCTGCTGTGGAAGGAGGCTAATCTGGACCTCAgAATTGTGCCTTATGGTTGCTTGGCAACAGGAGATCACTCTGGTCTGATTGAGGTTGTGTCATCAGCTGACACCATTGCGAACATCCAAAAAACAAGCAGCAACATGGCTGCTGCCGCCGCCTTTAATAAAGATGCTCTACTGAACTGGCTTAAAGACAAGAACTCTGGAGATGCTTTGGAGAAAGCCATTGAGGAGTTCACTTTGTCGTGTGCTGGTTATTGTGTTGCCACCTATGTCTTGGGCATTGGTGATCGGCATAGTGACAACATCATGGTTCGCAGTACAGGGCAGCTCTTCCACATAGACTTCGGCCATATCCTAGGGAACTTTAAGTCCAAGTTCGGGATCAAGCGTGAGCGTGTTCCTTTCATTCTTACACATGACTTCATCCACGTGATTCAGCAAGGAAAAACAGGCAACACTGAGAAATTTGGAAATTTTAGGCAATACTGTGAGGAGGCGTATCTGATTCTGAGAAAGAATGGAAATCTGTTCATCACACTCTTTGCTCTGATGCTCACAGCAGGCCTGCCAGAGCTTACTTCTGTCAAagatatacagtatttaaagGACTCTCTGGCATTAGGTAAAACTGATGAGGAGGCTCTCAAGCAATTCCGGCAGAAGTTTGATGAAGCTCTGCGAGAGAGTTGGACCACCAAAGTCAACTGGATGGCCCACATTGTGGCTCACCCTTCATAAACCGAGAGAAACGCAACTTCAGGCTCCAAACTGACGTCAGGGTTCACCATAAAGCACTATAAAGTGCAGCAAAACAGTGATATGCAATACAACTTATTTATGATCTTACGAAATTGATGGCCAGATCACATGGATTTAAGTGATTTTTCAAAGATCTGGAGTCTGcaggaataaacaaaaaacttctAAGCTTCtacgctttcttttttttgttgaatatgAACTGCCTCTGACCACAGGAGAATTGTAAAAAACCTTGCCTTGACATTGGATATAATTGCCTTCTACGAGGTAACAAAAGAAAACGTTTCAGCTTTTTCTCCCTCCACTGAAAAGTCAAACAATGAATATGTCCAGCACATCCTTCTAGAGAGAAACGTGAGTCCCTAAAAGATGGCTCAACAACACAAGGTTTGGCCACTCAGAAAGATGTTTATGTTGGGACTTTTGAAAATGGACAAATCAAAGCACAAGCTCAGAGAAAGTGCATCTTATAATACCAAAAGGTAAACATGTGCCTCACTGCACAAGAAACTTTTTAACTGTATGTGCCAGACTACTTTATTATGAGGAATAGTCTTAAAAACACTGGAATTATGTTATAGGTATAAATATTTGATGagttttaaatgttgtattaGTAAAGCACTGTCCCTATATACCACAGTACTACTATAGCTATATATAGCAGAGATGgctataataaaaattatgggATGGCTTCACACACAGATATTCAATGAGGATCACTTTGAAAAAATGCTGTGTAGATGAAGGACTTTCCTTTCCTCTCTGTGTTGAGAAAAGCTCATGTAGTTTGTTTGGTGCTGGCCATAAAGAAAATCTCTATGTAAGCACAGCATTgtaatcaaacattttaaagctttcgACCATGAAACGGCTCATTTTGGTGCCTGTTATTTTAAGAGTAATTCACAAATGCATATGGTCTAAATGTATGCCTGCATATCGAAACTCACAATTTCAACCACCTGTTTACTCAGAATATCTGCACAAAAGACTCAAAGGACCAAAAAGGGGAGGTCTAACTGTCATGACAGCTACTGTCTACTGACAGCTCAAGCAGTAGTAATTACTGATTAATGCCTATATTTTACAGCACAGAGAGtaattttcaatgttttttttttactgtacataaCATGCTGTCTCTAGTGCTGCTTCTCTTTTTGGCTGTGTGACTAGGGATGTTTTGATGCACTGagcatgttatttttacacTGAATATCTGTATGTGTGAATGGGAAGAAAGTTTGCACTGTGATTAGAAGATTATTAAGAGCAATGCAAAGATTCTAGGACCAACATTCCAGAGAATTATACATTCATTTCCTGTGCTGTTATGGTATATGAGAGTAAGATTTGTGCCTAtcaaataaatttcattttacacTAGAA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0005886 plasma membrane cellular_component
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG:

id description
K00922 PIK3CA_B_D; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152922 lncRNA downstream 80707 3963762 ~ 3964040 (-) True G103515
TU152921 lncRNA downstream 81462 3962711 ~ 3963285 (-) True G103514
TU152915 lncRNA downstream 98337 3946207 ~ 3946410 (-) True G103508
TU152841 lncRNA downstream 208499 3835190 ~ 3836248 (-) True G103464
TU152832 lncRNA downstream 217569 3826962 ~ 3827178 (-) True G103455
TU153182 lncRNA upstream 429689 4506356 ~ 4572914 (-) False pcp4b
TU153233 lncRNA upstream 579752 4656419 ~ 4659476 (-) True G103753
TU153238 lncRNA upstream 585929 4662596 ~ 4667353 (-) True G103754
TU153240 lncRNA upstream 600929 4677596 ~ 4678231 (-) True G103756
TU153271 lncRNA upstream 631147 4707814 ~ 4709080 (-) True LOC122359119
XM_043259148.1 mRNA downstream 2151 4023813 ~ 4042596 (-) False LOC122359034
XM_043259147.1 mRNA downstream 2151 4023813 ~ 4042596 (-) False LOC122359034
XM_043259146.1 mRNA downstream 2152 4023813 ~ 4042595 (-) True LOC122359034
XM_043258405.1 mRNA downstream 117424 3837856 ~ 3927323 (-) True mre11a
XM_043258312.1 mRNA upstream 7124 4083791 ~ 4088018 (-) True foxl2a
XM_043258818.1 mRNA upstream 89842 4166509 ~ 4187843 (-) False rinl
XM_043258819.1 mRNA upstream 89842 4166509 ~ 4187843 (-) True rinl
XM_043258820.1 mRNA upstream 89842 4166509 ~ 4187841 (-) False rinl
XM_043258821.1 mRNA upstream 90496 4167163 ~ 4187844 (-) False rinl
TU152826 other downstream 228005 3816062 ~ 3816742 (-) True G103449
TU152820 other downstream 270933 3753341 ~ 3773814 (-) True LOC122359312
TU152818 other downstream 274484 3753341 ~ 3770263 (-) False LOC122359312
TU152821 other downstream 289580 3753341 ~ 3755167 (-) False LOC122359312
TU152714 other downstream 881199 3156930 ~ 3163548 (-) False LOC122358351
TU153319 other upstream 1361381 5438048 ~ 5438947 (-) True G103825
TU153427 other upstream 1667865 5744532 ~ 5749339 (-) False pgm2l1
TU153584 other upstream 2069506 6146173 ~ 6146517 (-) True G104011
TU154060 other upstream 3037759 7114426 ~ 7119286 (-) False mmp28
TU154467 other upstream 3493179 7569846 ~ 7572090 (-) True G104603

Expression Profile