RNA id: XM_043263915.1


Basic Information

Item Value
RNA id XM_043263915.1
length 2339
RNA type mRNA
GC content 0.54
exon number 2
gene id onecut1
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 9696223 ~ 9702146 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACAACGGCAGACATGGCAAGAGATGGCGAGGGACGCGAGCACACTGACACCATGCACTGCTGAAGGGACGGGGGCCTTaacatttccaaaaaattacaaaactttataaaacacagaaaaaaaggaaacagagaaaaatcAGAAAGGAACGCGAagaagaaggggaaaaaaaaaatagcaacagAACTTTTCCGATGAGAGCGCTTCTGTGGACGCTGCTCCGCTATATCAGATAGATGATTTGTCCACACGCTTGCACGTATCATGAACGCCCAGCTGTCGATGGAGAACATTGGCGATCTGCACGGAGTGAGCCATGAACCCAGCGCGGCGGATCTCATGACCGGAGACAGCGCTCATCACAGGAGCCACCGGAGCAGTCTGTCAGCCCATGCGCGCTCCATGGGCATGGCGTCAATCCTGGACAGCGGCGACTATCATCACCACCGGCCCCCGGAGCACCCCGGGCTCGCCACGCACCTGCACCCGGCCATGAGCATGGCGTGCGAGGCTCCCCCCGGGATGAGCATGAGCAGCACCTACACCACCCTCACTCCGCTGCAGCCCTTACCGCCCATCTCCACCGTCTCCGACAAATTCCCGcaccaccaccatcaccaccaccaccaccaccaccatcacccGCACCAAAGGATCCCGGGGAACGTCAGCGGGAGCTTCACCTTGATGAGGGACGATAGGGGTCTGGCCCCGATGAACAATCTCTACTCTCCCTACCACAAGGACGTGGCCAGCATGGGACAGAGCCTATCGCCCCTGTCTGGTTCCGGACTGAGCGGCATTCACAACTCCCAGCAGGGGCTGCCGCCCTACGCGCACCCCGGGGCCACCATGCCCGCCGAGAAGATGCTCACGCCCAACGGATTCGAGGCACACCACCCCGCGATGTTAGCTCGACACGGGGAGCAGCACATGAGCGCGTCTTCGGCGAGCATGGTGCCGATCAACGGCATCCACCATCACCCGCACGCCCATCTCAACGCCCAGGGCCACGGCCAGGTGCTGGGCTCCACCAGGGAGCAGAACCACTCGTCCGCGCCCGGATCGCAGCTCAACAACGGCAGCAGCTCGGGACAGATGGAAGAGGTCAACACCAAAGAAGTGGCTCAAAGGATCACCACGGAACTCAAAAGATACAGCATCCCGCAGGCTATCTTCGCCCAGAGGGTGCTGTGCCGCTCGCAAGGGACGCTTTCGGACCTGCTCCGGAACCCTAAGCCCTGGAGCAAGCTCAAGTCTGGCCGGGAGACCTTCCGCAGGATGTGGAAATGGTTGCAGGAGCCTGAGTTCCAGAGAATGTCCGCGCTCAGGCTCGCAGCGTGCAAGAGAAAGGAGCAGGAGCACGGTAAAAGCGAGCGGGGGAGCATCTCCAAGAAGCCCCGGCTGGTCTTCACCGATGTCCAGCGTCGGACTTTACATGCAATATTCAAAGAGAACAAGCGTCCGTCCAAAGAGTTACAAATCACCATCTCTCAGCAGCTGGGCCTGGAGCTCGCCACCGTCAGCAACTTCTTCATGAACGCGCGTCGACGGAGCCTCGATAAGTGGCTGGACGACGGCAGCTCCAACTCGGCcaactcctcctcctccagcactTGTACCAAAGCATGATGGAGTAGCGGCTGCGTTacgggaaaaaagaaaaaaaaaaaaaaacttcggtggaaaagctttaaacaaagaaaacttaACAAGAGACGATTTTAGACAGCGTTTGCCCTTAAAACTTGTACAGTACCGATATTTATAATATCCAAAGAAAAACACCAAAGACTGCTTTGAACCCCATTTCTTCGTTTATGTCTGACattctgcataaaaaaaagaaaaaaaagaaaaaaagaagaagttacACTCCAATCATCTCGACACACTCCCCTAACCGGCGTCTTTCTTTCTCATGCGATCGGTTGCTTTCAAAGACGTTTTTCTCATCGGTCATTTTCTCAAAGGCGGAGTGATTGTTATTCACTCTGAtgtcagatttcagattttgcGACCTCACTGAGGGGCTCGACGTCATGCGTTCACCTCTATAGGCGTCCCAGACGTCGCCGGGGACGCCAAATGTAATCAGGCGGTGTAGAATCTCGACAAAGGTCGCCCTCAGGATAGTGCTTTCTTCCTAATTGTTGGAAAAGTTACATAGAAACCTAAAAAGTACATGTGAACTTGCCATCTTCACCACTTATCAATCACAGATGGCGGAACCAAAGAAAAACGCGTGTATtttgttttcgttttgtttctttaaatcaaGCCCAAACTATATTCGCCCCTCTTAACAAAGACCCCGTTTCCGTCCCAATCAGGGcaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035622 intrahepatic bile duct development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184883 lncRNA upstream 540 9694203 ~ 9695683 (+) True G125236
TU184824 lncRNA upstream 183981 9419549 ~ 9512242 (+) False G125194
TU184828 lncRNA upstream 183981 9419549 ~ 9512242 (+) False G125194
TU184830 lncRNA upstream 183981 9419549 ~ 9512242 (+) True G125194
TU184803 lncRNA upstream 344325 9351635 ~ 9351898 (+) True G125191
TU184908 lncRNA downstream 84114 9786260 ~ 9788103 (+) False G125243
TU184910 lncRNA downstream 84114 9786260 ~ 9788103 (+) False G125243
TU184906 lncRNA downstream 84691 9786837 ~ 9787955 (+) False G125243
TU184907 lncRNA downstream 84691 9786837 ~ 9787955 (+) True G125243
TU184887 lncRNA downstream 100773 9802919 ~ 10037928 (+) True G125240
XM_043216606.1 mRNA upstream 131976 9555052 ~ 9564247 (+) True iqcg
XM_043216607.1 mRNA upstream 131976 9555052 ~ 9564247 (+) False iqcg
XM_043264299.1 mRNA upstream 687174 8999349 ~ 9009049 (+) True LOC122362732
XM_043264298.1 mRNA upstream 890198 8802983 ~ 8806025 (+) True LOC122362731
XM_043263991.1 mRNA upstream 1148515 8544699 ~ 8547708 (+) False LOC122362511
XM_043264262.1 mRNA downstream 7058 9709204 ~ 9739406 (+) True fam214a
XM_043264263.1 mRNA downstream 27155 9729301 ~ 9739406 (+) False fam214a
XM_043265107.1 mRNA downstream 42758 9744904 ~ 9749783 (+) True arpp19a
XM_043264877.1 mRNA downstream 49111 9751257 ~ 9801571 (+) True LOC122363015
XM_043264075.1 mRNA downstream 445929 10148075 ~ 10160926 (+) True LOC122362557
TU184804 other upstream 330735 9359436 ~ 9365488 (+) True G125192
TU184604 other upstream 1159275 8176353 ~ 8536948 (+) True G125041
TU184436 other upstream 2517947 7177839 ~ 7178276 (+) True G124920
TU184430 other upstream 2523203 7172626 ~ 7173020 (+) True G124914
TU184395 other upstream 2669088 7026318 ~ 7027135 (+) True G124881
TU185257 other downstream 1122828 10824974 ~ 10837276 (+) False G125461
TU185261 other downstream 1122828 10824974 ~ 10837276 (+) True G125461
TU185314 other downstream 1265939 10968085 ~ 10969767 (+) True G125496
XR_006253172.1 other downstream 1523969 11226115 ~ 11231714 (+) False ccnl1a
XR_006246968.1 other downstream 1532185 11234331 ~ 11237147 (+) False selenot1b

Expression Profile