RNA id: XM_043264075.1


Basic Information

Item Value
RNA id XM_043264075.1
length 1130
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC122362557
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 10148075 ~ 10160926 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTCGATGACTTTCTAAAGACAATATACTCACCCGATTCCACTGCAATATACTTTCCATGCTCATCTGTGCAcctacttcctgtctgagtcTGCTTCCGTTACAAAGtgctctctcctctcctcagCTGCAATGAAGACCATTGTGCTCATTCTACTGCTTGTGGCTTTCAGCTCAGGTGATAAAATCATTGGAGGTTATGAATGTCGGCCGCACTCTCAGCCCTGGCAAGTGTACCTCAGCGATAATAGATTCTCATGTGGAGGATCATTGATTAATGAAAGATGGGTTATGTCTGCTGCTCACTGCACATTCATaaaaaacgaTCTCCTCATCCGCCTGGGAACCCATAACTTGCGTGCTACTGAAAGCACAGAGCAGAGGATCAGAGCAGAGAAGATCATCCCTTTCCCAAAATACAATAATCGGCCTCATAATAATGATATCACGCTGATCAAGCTGAGAAATCCTGCCACCCTCAACAATTATGTGAGGCCAATCCCTCTGCCAAACAACTGCACCTCTGCAGGGGAGCAGTGCTTGGTTTCTGGATGGGGCAGAACTGAAGCTGGCCCTGCTTCTGCCCTGCAGTGTTTGGATTTGCCTGTAATCTCAAACAAGCTTTGTAAGCGTGCTTATGGTCCattaataactaaaaacatGTTCTGTGCTGGATTCATGCAGGGAGAGAAAGACTCGTGCCAGGGGGATTCTGGTGGCCCTGTAGTGTGCGGCGGGAAACTGAAAGGTGTTGTTTCCTTTGGCGAGGGCTGTGCTAAACCGGATTTTCCTGGGGTTTATGTTGAGGTGTGCCGCTACACGAAATGGATCAATTCCATTATAGCGAAAAACTAACTGTTTATTTAGTCTGGTTGGCCCTTTACAAGTTATATCTGTAATTAAGTCAAAGTCCCTTTAAAAGTCAtccaaatttttaaaaagcctcTCAGACAGCTGTTTCAGTCATGCACGTACAGCtatttaaaagaagaaacattAAATTCTATAGCAACCAGAGATATCCACCttcctttttctatttttcttttgtatttcctCCCATTCACAAGTAATTTGAgtgcaaaatatttgtatatcttaatctttgaattaaattcatcttaaaatta

Function

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246947.1 lncRNA upstream 12987 10133971 ~ 10135088 (+) True LOC122323099
TU184922 lncRNA upstream 85295 10057741 ~ 10062780 (+) True G125254
TU184924 lncRNA upstream 85295 10057741 ~ 10062780 (+) False G125254
TU184920 lncRNA upstream 93018 10054812 ~ 10055057 (+) True G125253
TU184887 lncRNA upstream 110147 9802919 ~ 10037928 (+) True G125240
TU185046 lncRNA downstream 87214 10248140 ~ 10249308 (+) True G125341
TU185050 lncRNA downstream 123712 10284638 ~ 10288340 (+) True G125344
TU185056 lncRNA downstream 125801 10286727 ~ 10336979 (+) False G125347
TU185055 lncRNA downstream 147628 10308554 ~ 10341585 (+) True G125347
TU185062 lncRNA downstream 180841 10341767 ~ 10343454 (+) True G125352
XM_043264877.1 mRNA upstream 346504 9751257 ~ 9801571 (+) True LOC122363015
XM_043265107.1 mRNA upstream 398292 9744904 ~ 9749783 (+) True arpp19a
XM_043264262.1 mRNA upstream 408669 9709204 ~ 9739406 (+) True fam214a
XM_043264263.1 mRNA upstream 408669 9729301 ~ 9739406 (+) False fam214a
XM_043263914.1 mRNA upstream 445929 9696223 ~ 9702146 (+) True onecut1
XM_043264134.1 mRNA downstream 29844 10190770 ~ 10193160 (+) True LOC122362596
XM_043264594.1 mRNA downstream 35878 10196804 ~ 10209150 (+) True gnb5b
XM_043264595.1 mRNA downstream 48427 10209353 ~ 10214486 (+) True bcl2l10
XM_043264789.1 mRNA downstream 136571 10297497 ~ 10320648 (+) True tmod2
XM_043216704.1 mRNA downstream 168016 10328942 ~ 10335753 (+) True lysmd2
TU184804 other upstream 782587 9359436 ~ 9365488 (+) True G125192
TU184604 other upstream 1611127 8176353 ~ 8536948 (+) True G125041
TU184436 other upstream 2969799 7177839 ~ 7178276 (+) True G124920
TU184430 other upstream 2975055 7172626 ~ 7173020 (+) True G124914
TU184395 other upstream 3120940 7026318 ~ 7027135 (+) True G124881
TU185257 other downstream 664048 10824974 ~ 10837276 (+) False G125461
TU185261 other downstream 664048 10824974 ~ 10837276 (+) True G125461
TU185314 other downstream 807159 10968085 ~ 10969767 (+) True G125496
XR_006253172.1 other downstream 1065189 11226115 ~ 11231714 (+) False ccnl1a
XR_006246968.1 other downstream 1073405 11234331 ~ 11237147 (+) False selenot1b

Expression Profile