RNA id: TU204737


Basic Information

Item Value
RNA id TU204737
length 5401
lncRNA type sense_over
GC content 0.42
exon number 2
gene id slc10a1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15003410 ~ 15015372 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATAAGACTCATCCTTAACAAACCTTATTTGGAACACTGATTATCTgagtaaatgtatgtataatgttCTAACTGTACATATTTAAGCATGTACTGTAATGTTGTCATTACTGTTTCACGTTACgcgatttttattttggaaaatgacTGACCTCATCACTAACGGTTTttcagtaatttattcctttttgaCAGCGCTACACAAACtttataaatgttcaaaaacattgtCATGTGTAATATTTGTACCGTGGTACGGAAAAGTAACACGTGCATCAAAACATATCCAGACAAAACCtgattttttacataaaaccgGAATACACGACGCATCAGAAATGACGTTAAAATCATATCctgttttgtttaacaaaagCTGTATTGCAAAAAAGCATAATTCACTCCTACAAACTAATGCAACATTCAAATGGTGTATCCACAATGACAAATTAAGTACATACATATGAATAGGGTGTATATCATGCAGTGTGGAGGGAACTTGGACGATTCTTTAATTATAATTCAAGCATCCACAATACAAACATACTGTGTATTCatgaagtaacaaaaataaacagttagCTGGCCCGAACGGCACAGGCTGTTCCATAAAACACTGAAAGACCTGTAAAGCATTAGAAActtcattttactttatatgtaGGATATGAAATGGCTGTACTGGCCTCGCTCCTCATTTTGTGTGGCAGTTCTTGCACTTGAAATTCGTATTCTTCTCAGCCTTTCACTTTTTCTCGTCTTCATGTCATGAATCATACTATTAATTATTCTTAAAACCCTAATTCAGTATTCAACGCACATCTTAAGGTCGCGCTACTCgaaaacaaatcacatttaCCGACTCgtccataaatatatttatacaattaaagACTCTCGACATCAATCAAACCTCACTCtgtatatgataaaaataacgACCACATACCCATTTTagacatgaacaaaaaaaatcccaccCCAAACAGCAGTATATTCCTGATTTAATGTGACTCTCCTGATCAAATGCCTTTAAACTAGCAACAGAGCCCGTGCTGTGAAACTCCTGGCGTGTGGAGAGGCTGTCCCTTCACTTACAGGACCTAAACTGACCAAAGATGGGACAATATTGCTAACTTCATCAGCCTCTTGCAGCGTTTGAACGCAGACGCATCTCTCAGCACACAGGGTTAGGGGAGGCTAGTGACGGCTGTCAGCGGACGGGGAGCGGGACGGTGGGGGGCGCTGAGCCGGGGCCGGCGGCGATGCTGATTCAGCACGTGGAGCTTCTTTGGGCCGCACGGGAGAAGCGCTGGCCGAACGCGACCGGCTTCTGGAACGGTTATGTGATTTGGGGCTGTGGGAATGGGAGCGGCTACGAGAACGGGACGTCGAGCGCCCTCGGGAACGAGAACGGGATGAGCTGTTTGAACGAGACCGAGTTCTGGATCTTTTTCCTGGACGCCTCAACAAGTTTGATTTTCCTACCATTGATCTCCTTCCCAGACAGCTTCTCCAGGGCATTTTTTAGATCACTATGAGAAGCAAACTCAACCACACTGCAGAAAGATAAAGctattaaacaaaacagcacaaaagcAGCGATCCAGATTCCTGCCAAAACACTTGTAGGGAGAGTAACAGGAAAGAAAACAGCCAGCTCACCCCTCATTAAGCTTTGGCCGATGGGCATCTGCAAAAGTAACCTCTCCAGCTTGTCTCATGAAATCCTTTAAATCCTACACACAGTACACCAGCATTTTGACTTAGCCAAGCAACTGAGATGATGGTTTTTACACGTTTTATGAagtatcaaaataaatgaactatcAAAGCCGGGGTCCGAGAATCTCTCAGTTCATGCTCGAGCCTCAAAATTTCGGCGCGTGCATATCAGCAAAAACGTATAGTGAttgacaataaaacagaaaagagtGCAAAAAGTGAAATCCAAGCGGACGACTTTGAATCGCTACGCGTTACGGAGGAGCGAATCGGCCACATTTCACGCTCTTATAAATCTCTATTCAAAGCTTTGCGAGGCCAGCCCTGGCTTCTAAACGTAGTGTACGCACAAAGGCTTCAGTGTCTTATCGGCCGAAATGAAAAGAGGTGGCGCATCAATAAAAGATACTTTTGGCTTGCAATGCTGCGACATTCCCGGACTCCCGTGCTACAAGACTAGCAGAGGAAATATGTGAAGCGGCTCATATAAAAGGGCCCCACATTagataaaatgtacatttacatggCAAATGCATTCTTACCAAAACACAAGTGTAAACAGTGTAGTGGAGCACAGGGCATCCCTCCATCGACCGTACCCTATTTGTGCCGTCCCCTCAAGGGCACTGAGCGTGAACAGCGAGGAAGAGATCATAGACTAATACCTGGGAACGTACCCATCGGGCTGGGGCCATAACCTGGAGATTTTATCCTCGGGGCCACCAGAGAGCAGGGTGGGTGAGTATACCGATCGAAGCCTCTCAAATTACCGAACCCCTCGATTGACTGCgtatgtttctctttttctctcgctctctttctgcccctctctctctcgctttcactctgtgtctctctctctctctttcggcTCGGCACCGTCACAAACTGCGCTTTGTAGCGGCAGCCGCTGCGTCTAGAGCGAGAGGGCATCACTCACAGAGAGCTCTCATGCGATCGGCGGAGGTCAACTAGGCGTGGGGCACAATGGGAGTGGCTTAAGCAGAGAGAGGGGCCCTGTAGGGGTTAACTCCACCATTAGCGAGCTCTTCCATACGACACAACAGTCAGGCTGGCAAATAGAGGGGTGAACAATTGGTTAAAACAGAGGCAAAGTGACTTAACCTTACCGTTTCCTCTTCTCTACAACTAATGGAGCATTTATTACATGACCTTGAATTCGACATTAATCTCAGAATGACAATTTTTGCCATCGATTTACATGTAACTGGATAGtcaaagtaattaaattaacataacTCTACATATTCTATTCATGTATGAAGGAAatccttattttttttgtcatttgcagTGACTGGGAATATGACTGACTTCGACAAAACTTGATAGGAAACCACTGAATGCTCACCTGCCAGCTGACTCTCGACGACAAATTCTCCACAATGAGGCGATTCTCCGTGCGCATTGGTGGAGGATTCCTGACAGGCGTAACGTTCGGAGTTATTGACTTATTTCTCATGCAGAAAATAAGACTAAAATGTTTACACGACCCTACCTgttcaaaaagatttaaaaacgtTTCTCATTCTCTTCAAGACggcaaaaaatacagtaaaatctgtGATACTGGGGGGAAAACggcttttagttttaatatgttttcaaatgtaattattcttGTTtcagcaaagctgaattttcaggatCATTATCtcatgatccatcagaaatcattttaatatgctgatgtggtgctcaagaaacgtcAATTAAACGTCAAGTTATCGTCAATTCTCAAAACACCGTGCTGCTTAACATGTTAGCAGAAACCATGATGCATTTTTGGGATCTTTtgatgaatgttaaaaaaaactaaaaacaattaatttgtaatatcCATTTTTTGTAACAGTTTAAAAGTACTTGCCAGTCTTAATCTAATTAACGCATAGTCAGCtattaaattctataaaaaaaattttttttttactgaaccCAACTTTTGAGCATTTGACAAAGTTTGACCCCTACCTTCGGCTGTCCTGAGAGCCACGAGCATACCGACCAGGAAAACGTCCTCCGCCGCCACCACCACGGCCTCGGCCCCCACGCAGACGGACACGGGCATGTTCAATGGTCACCCTGCAATCAAAACATCCCTCATACATGGGTCTGTCTCCGCTAATAAGTCTCTCCGTGGTTCATCTTCTCTTCTCCCTAAACACCATTAGGACATTTTTCCTTACCCTTGTTACTGTACTGCTCACTGAATGAATTAAAGCCGTTTCAAAACAATATGAGTTGAGGAAAGCAATGCACAAATAGAAACGGATTAAAAATATACCTCTCATTGCAGAGCTCTTTCCCATCAAGCTCATAAACGGCATCTTCTGCATCTCTCGGATCATCAAATTCCTGCAAGAAACAATTCAAGATTTACACACCACATAGCTTTATTGCTGCTATTCTTGATCTACaggttatttttctttcttcttttttttttagaacttagaattacttatttaattaaaaaaaatatttattttgagcacATTTCTTAACTtcttagtattaatattaatactaatattatataagccaatatataattattctttaattcttttaaactttttattcatcagtaTACTCTGAAAAAATACGGTTTCTACAAAAATCGAtcatagaaatgtttcttgaacaccaaATCTTTACATGGATTAAAGAGGGACAACTGTAGTATAGTTAGTGGCTGCTGAAAACTCAGGTTTGCAAATTGAATAAATGGCGgtttaaatgacataaaaacaaaacacaaagttattttaaatagtaaaaatgtctGTGTTACCGTTTATACTGTAACGATATATTTGTATGGTCTATCGCCATAGGTATACGCTGTCAAATAACGCTGTCTATGTAGGCTGCTCAGTAGGTTTTGTAACGCAGCCCATACGCTATTATTATAGTCACTGCGGCTGAAGCACTGACATGCATAGAGCATGCTATTGCGATGTTGTTAAGTTGTCAAGAAAAGGCGAAACGTACTACAAATCCGAAGCCTCTTTTTAGGTCAATGTCCCTGATTTTTCCATAACCCTTGAAGAACCGCTCGACGTCCTTCTCTCGAGCAGAGGGGTTCAATCGACCGATGAAAATACGGCAACCGCTCATCCTCCTTAAAACAACCGCAAACAAGTTAAAACAACCGTAATATAACGTAGCCGTCATTCTGCGAGCGTCAAACACCTACGCATTCCTGCAACAATAATGGCTCGAGGCCACAACCCACATCCAGAGAGCGCTCGTTAACCGCCGAATCGCGGCACAAAATGCAGTCGTTTATAACAATACAGCGCTTACGAGCGGAATTCGAGCAAGCGTGAAGATGCACCGTCTCAGGTACGCACCTCTACCTGGTGTTTCTCCTCTGAATGTGTCGCGTCTGTACGAACAGCCCCTCACACAAAATGGAGTCAGTGTAGAGCTGCGAGCGACGCTCAGCGCTGATCTGAGATCAGCTCCGAACACCATAACCACTCTGCTGCTGtatgaaaattatttacttCAGGGTCGAGACATTTGTTTTATAGTGTCATTTTTTcctctgatttaaaaaaaaaaattattccgACCACAAAGTAATTTACTGACACGAAACcgaatatatatacacaccgcAACGAATTGTATTGAATGATTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204727 lncRNA upstream 29662 14976262 ~ 14979677 (+) True G138675
TU204725 lncRNA upstream 29662 14976330 ~ 14979677 (+) False G138675
XR_006247214.1 lncRNA upstream 104828 14903324 ~ 14904511 (+) True LOC122324711
TU204623 lncRNA upstream 214535 14794594 ~ 14794804 (+) True G138606
TU204622 lncRNA upstream 216407 14792621 ~ 14792932 (+) True G138605
XR_006247307.1 lncRNA downstream 41844 15057216 ~ 15076661 (+) True LOC122325557
TU204762 lncRNA downstream 167430 15182802 ~ 15190219 (+) True aven
TU204801 lncRNA downstream 243623 15258995 ~ 15278536 (+) True G138726
TU204805 lncRNA downstream 243623 15258995 ~ 15278536 (+) False G138726
TU204818 lncRNA downstream 276114 15291486 ~ 15292209 (+) True G138732
XM_043218911.1 mRNA upstream 13115 14985633 ~ 14996224 (+) True fntb
XM_043219333.1 mRNA upstream 164721 14814091 ~ 14844618 (+) False dpf3
XM_043219334.1 mRNA upstream 164721 14814091 ~ 14844618 (+) False dpf3
XM_043219335.1 mRNA upstream 169352 14814091 ~ 14839987 (+) True dpf3
XM_043219336.1 mRNA upstream 169352 14814091 ~ 14839987 (+) False dpf3
XM_043219132.1 mRNA downstream 22365 15037737 ~ 15041884 (+) True acot20
XM_043218768.1 mRNA downstream 28067 15043439 ~ 15052138 (+) True gpr176
XM_043218669.1 mRNA downstream 143615 15158987 ~ 15162918 (+) False katnbl1
XM_043218671.1 mRNA downstream 143622 15158994 ~ 15162918 (+) False katnbl1
XM_043218670.1 mRNA downstream 143992 15159364 ~ 15162918 (+) True katnbl1
TU204312 other upstream 954506 14051993 ~ 14054833 (+) True tmem251
TU204309 other upstream 954971 14051993 ~ 14054368 (+) False tmem251
TU204136 other upstream 1338065 13668439 ~ 13671274 (+) False syne1a
XR_006247292.1 other upstream 1574826 13416681 ~ 13434513 (+) False aasdh
XR_006247294.1 other upstream 1621939 13384365 ~ 13387400 (+) False LOC122325384
TU205015 other downstream 706489 15721861 ~ 15845645 (+) True LOC122325444
TU205035 other downstream 747742 15763114 ~ 15797028 (+) True G138869
TU205021 other downstream 905403 15920775 ~ 15922280 (+) False LOC122325444
XR_006247306.1 other downstream 3593140 18608512 ~ 18634663 (+) False cnih3
XR_006247305.1 other downstream 3593140 18608512 ~ 18633193 (+) False cnih3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU762376 True 5979 TUCP 0.45 7 NC_048572.1 7401464 ~ 7414236 (-)
mexican tetra (Astyanax mexicanus) TU38445 True 2995 TUCP 0.47 7 NC_035899.1 56232739 ~ 56239729 (+)