RNA id: TU762376


Basic Information

Item Value
RNA id TU762376
length 5979
RNA type TUCP
GC content 0.45
exon number 7
gene id LOC110529302
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 7400907 ~ 7423688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGCCGACTCCATTTTGTGTGCGTGTCTTTTTCCGCTGTGTTTTCAAGAGGCAGCAAGTCAATCTCCCCCCCAGCAGAAGAAAAACACAGAAAGATACACATCCTACAGCCAGAATGAGTGGATGCCGCATATTTGTGGGCCGGTTGAACCCGTCCGCCAGAGAGAAGGACGTGGAGAGATTCTTTAAAGGATACGGTCGCATCCGAGACATCGACCTCAAGAGGGGCTTTGGTTTTGTGGAGTTCGATGATCCCAGGGATGCTGAGGATGCCGTTTATGAGCTGGACGGCAAGGAGCTCTGCAACGAGAGgGTAACCATTGAGCATGCCCGAGTGCGCCTGCGTGGTGGCCGAGGACGCGGTGGGGACAGAGGCGGCggcggaggaggaggtggtggtggagggggaggaggaggagggggtggtggcCGTTTCCCAGATCGCTACGGCCGTGGCTCCCAGGATAGTCGGAGTAGGAACCCTCCTCCGATGCGTACAGAGAACCGTCTCATCGTGGAGAACCTGTCATCTCGTGTCAGCTGGCAGGTGAGTTCCTTACCTGGGTGTGTCTCTACCTGCCTGTTAGTAACTCCAGGCTCTGACTGATCAGACGGAGAGAACGCTCAGCTTTATACCTGAAATCTTCACTAGTAATGATCTCAAGGCAACTTCCTGGTGCAGTCCAGGTAAAGACTAATACAAGACTCATActcttcttttctttttttttgcctaCGTTTATTTTAGTATATGTGGTAATATTCCATGGGCTGAGAGCAAATAAATATGCAAATCGACAGCACTAAATGTGTTGTGATTGGCCCAAATGGCTCCTTGCACAGTATTTAATAACCTATCAAGAGCTCTCAGTACATATCCAGCCCTTTCCTGAGAGCTTCCGGTGGAGAAATGGCTAGCCATAGCTATTTGCTGCAGCTAAAGAATGCAGTTGATTAGATacaagagggagaaaaaaaaacatttgtctgTTTTTTAATTTTAACCAATTCTTCACCCCTTTATTTACCAGCCTGACTGTTGTGTCGTATGGAAGAGAGCGCTTCTTATGGTGGAGTTAACCCAATCAGGGTCCCTCTCTCTGGGTTGAGCCATGTCGTGCCAGCCAGCGTGCCTGTCGGCCCGCTCCTAGTtggttcctctcctcctgctggTCGTATGAGAGAGTGCTCCCTCGCTTGGTCGGGGGGTCAGGTCCCAGCCCCGGGTTCCACTACTCGCTCTGCTCTAGAAGCGCTGGCTGCCCCTTCGCTCACACTCGCTGTCCCCCTGGTGGGGGCCTCGATGGCCGGAGCGCCGTGCTGACACAAATCACAaacagagaggcagaaagaggagATTCGATGATGGTgttcatgatgatgatggtggcgGTGTTTTGGTCTGATCCATGGTGGTTCGTTAATTTGAGAGGCTTCGATCGATCCATATCTCCCCTCCCcaatcccctcccctccccatgtGCTGTGGTTCCGTCCGCACATCGCGAGAGGTGCCCAGAAGTGGATAAAATCTGCTGAGCGAGGTCACGAGAGGTCAAGGTTGGATCACAAGGTGCGATCAAggtggttatggtatggtggACTAGGAGAGCCTGCTACGGCCTGCTCCAAAGGGGTCGATATCAGGTATTagtttcctctcttcctccctgttgACTCTCTGTACTGAGACTGAGGGGGGGGTGCTGAGCCCTAGATGGGGTTCCCGTCCCGGGTGTTAGGGAGCTCCTGTCTAGCCAGAGACGACAGGGCTCTTGGGGTTCATCAACACAAACACCTCTGCTGGTCATGCAGACTTTTTATATTGATGACTATTCTGTGTAGTTGTTTTTTAAAGACAGCGGGGTCCAATAATTTTGAGACAATGCAAAAAATAATCCAAAATCAATGTTCGGGTCAATTTGAAATATTTTACGTAAGCTTcctccgtttttttttttttttacagataaaATTTCAGATCAcgtaggctgtgtttacacaggctaCCCAATGGAGCAAAGTtcttacaaaaaaaacagaatgcATTACCTCATGTTCGACGATACGATAGTCAGTTAACGTTACTTTTTTTCTGAAGCCCCTTTATGCTTATTGATATTAGGGTCCTTCCAAATTCAGTGATGCTGATGAAGATTGTCGTGGTAGAATCGTCCCTACGGGGGAGAGAATAGGGGTTTTGGAATGAATGCCGACTTAAGGGCAACACAAGTTTAAGAGCTCTTGTATGTTTTCTTCGGAGATAATTAGCAGTCAGTTAACGTTaccttttttttaatttttaatgaaGCCTTTTGATTTGACATAAATGCTTCAAATTTTTTTTTGCCGTTTATCCAAAATCCTACAGAAACGCAGTTAATTTCCCCGTAGGCATTGTCCAACGAACCGTGGCGTAGTTGGTGCCTTCAAGAAGATGCCGTTACTATTTCTCTCTAGTGGAGGTGCACAAAGATGATGGTTCACACGCACCTACCACAAATTCTTTGTTTCGCTAAGTTgtcagtattttttttacatcgcTCTcggtaataaataaataaaaaattgtaaaaaaaaaaaaatctgaacatcGTACATGATCCTAACTAGCTCCAGGGTGCTGTTAATTAAAGAACAAAAGATTGCATTGATTTATTGGCACGTTGAACCATGCTGTGGTTTAAAGACAGGATGGGACAGCATTGTTTTAGCACTATCTGAATTCTGCCATCTTTATGCACGCTCgccattctgtttttttttttttaccccccccccccgactgatTGGTCAGATATTTTTCAGTGCTAATATGATTGGTCAGATATTTTTCAGTGCTAATATGATTGGTCAGATATTTTTCAGTGCTAATATGATTGGTCAGATATTTTTCAGTGCTAATATGATTGGTCAGATATTTTTCAGTGCTAATATGATTGGTCAGATATTTTTCAGTGCTAatatgattggtcaaaagaccaattagtagcAAAAAGATCCGACTGTGTAAGCTACTGTTTGTTTTTCCGGCAAAGGCTTTCATCACATTTCCTTAGGAACGGTCTTAAGCTTGTAGGGCTTTGTAGCCTCTGTTCAGTTGAATACTTATTTTTGGCCATTTTGCCAAGCTCTTATATTTGCTACAAAGGGGATTCTTAAGGAGGTCTGTGGCGTATTCTGAACAGCTAGTTTTGTCAAGTTGATTGGTCGCGGACGTCAAATGTACCCACACAACTTCGCGCACAGACAGACCTAACCGTTGAACTGACAACATTTATAACACAATGATTCtgtgttgctggaccagacagccAGTCATTTTGCAGTGTTCTCTAAGGTTCTTGGACCCCTCTAGTTATTTTAGCCTttgtagtagaggtcgaccgattatgatttttcaacgccgataccgatttattggaggacacaaaaaagccgataccgattgaTCGGCCGATTTTTAAATAAAGATTTAAAAATATAGATTTGTAATGactattacaacaatactgaatgaacacttattttaacttaatataatacatcaataaaatcaatttagcctcaagtaaataatgaaacatgttcaatttggtttaaataatgaacaaacacagtgttggagaagaaagtaaaagtgcaatatgtgccatgtaagaaagctaacgtttcagttccttgctcagaacatgagaacatatgaaagctggtggttccttattacatgagtcttcaatattcccaggtaagacgttttaggttgtagttattataggaattataggactatttctctataccatttatatttcattaacctttgactattgggtgttcttataggcactttagtattgccagtgtaacagtatagcttccgtccctctcctcgctcctacctgggctcgaaccaggaacacaacgacaacagccaccctcgaagtatcattacccatgcagagcaaggggaacaaccactccaagtctcagagcgagtgatgtttgaaacgctattagcgcgcaccccgctaactagctagttatttcacatcggttacaccagcctaatatcgggagttgataggcttgaagtcataaacagcagcgctgctggcaaaacgcacaaaagtcttgtttgaatgaatgcttattaGCCTGCTTATAatctcgaaaacaagatgtttattctttcagtgaaatacggaaccgttccgttttatctaacgggtggcatccataagtctaaatatttctgttacgttgcacaaccttcaatgttatgtcataattacgttaaattatggcaaattaggcggcccaaactgttgcatatacactgactctgcgtgcaatgaatgcaagagaagagacacaatttcacctggttaatattgcctgctaacctggatttcttttagctaaatatgcaggtttaaaaatatatacttgtgtattgattttaagaaaggcattgatgtttatggttaggttcacGTTGGAGCGACGACAGTCCTTTTTTGCGAATGCCACCActtcgattatatgcaacacaggacacgctagataaactagtaatatcatcaaccatgtgtagtagTAACTAGTTATTATGactaagtttaatgctagctagcgacttaccttggcttactgcattcgcgtaacaggcaggctcctcgtgaggcaggtggttagagtgttggactagttaactgtaaggttgcaagattgaatccctgagctgacaaggtacaaaatctgtcgttctgcccctgaacgaggcagttaacccaccgttcctagggccgtcattgaaaataagaatgtgtccttaactgacttgcctggttaaataaagattttttttaaataaaaaaaattgtcgtCCAAAATTACCCATTTCCGATTTTTATGAGAActtaaaatcggccctaattaatcggccattctgattaatcggtcgtcCTCTACTTTGTAGTTGCTCTATGATATCTTTCTCTCTTTGGGGAAATGTGATGCATTATGTTGACCGTGTTGTCCTGGTCCGGTCCTAACTTAGCCTGTCGTTGTGTAGGACCTGAAAGATTTCATGAGACAGGCGGGGGAAGTCACCTTTGCAGATGCCCACCGCCCCAAGCTCAACGAAGGGGTGGTCGAGTTCGCTTCTTACAGCGATCTGAAAAACGCTGTTGAGAAGCTGTCTGGCAAGGAGATCAATGGAAGGAAAATCAAGCTGATCGAGGCAGCTAAGAAGAGggGTTCCAGGAGTCGCTCCCGTTCAGAGAGCTCCTCTCGTTCCCGTTCCCGTAACCGTTCCCCGTCCCGCTCCAGGACACCCCGTCGTTCCAGGTCCCACTCCCCCAAGAGGGACTACAACCGCTCCCGTTCTCGGTCCCACAGCGGCTCCCCGGCCCCCCGTGGTGGTGCAGGAGGAGCCGCCCCAGGTTCCCCACCGCCCAGGGCCAAGGAgacctcctccacttcctccaaaCGGCCCTCCAAGCCCAGCAAGTCTGcctctccccactcccctcccccTGCACAGCGTGCACCTTCCAGGTCACCTTCCAGGTCTAGGTCTCGTGGCTCTCGTTCCCCGTCCACAGACAGCCGCCACTGAGTATTGAGAACAGGAATATACACGTTTTGACATGAGCTCACACTCGCACACAGTACATGAATACACTCGCATTAAgacaaacatgaacacacacacacacacatagttttaGTAAGACTACAGGCCAGGGCCAGGAACTGTAACACCTAGCAGTACTGGTCTCCTGAATCTGTATTTGCCCCTCTGTTTCCTCCCTATgccaccccaccccctcttctGACATGGCTGACCTTTGACCTCCTGCAGCATCATGGGTGTTCTCAGTAAAAGCATCCGTCTCTGAACACAATGACGGTTTCATTTTGAGCATTTATTCCCTAaacctttttgttttgttttttactgGTTTTGTTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU762414 lncRNA downstream 6424 7394225 ~ 7395040 (-) True G669311
TU762410 lncRNA downstream 13301 7387264 ~ 7388163 (-) True G669307
TU762381 lncRNA downstream 46383 7351687 ~ 7355081 (-) True G669285
TU762340 lncRNA downstream 50725 7346943 ~ 7350739 (-) True G669251
TU762306 lncRNA downstream 66750 7325550 ~ 7334714 (-) False G669229
TU762445 lncRNA upstream 66725 7480961 ~ 7481188 (-) True G669339
TU762446 lncRNA upstream 69398 7483634 ~ 7484459 (-) True G669340
TU762455 lncRNA upstream 79375 7493611 ~ 7493835 (-) True G669345
TU762456 lncRNA upstream 81357 7495593 ~ 7495875 (-) True G669346
TU762459 lncRNA upstream 85493 7499729 ~ 7500004 (-) True G669349
XM_021611425.2 mRNA downstream 31942 7340699 ~ 7369522 (-) True LOC110529304
XM_021611427.2 mRNA downstream 31943 7340699 ~ 7369521 (-) False LOC110529304
XM_021611424.2 mRNA downstream 31944 7340699 ~ 7369520 (-) False LOC110529304
XM_021611426.2 mRNA downstream 31944 7340699 ~ 7369520 (-) False LOC110529304
XM_036984644.1 mRNA downstream 31948 7340699 ~ 7369516 (-) False LOC110529304
XM_036984651.1 mRNA upstream 4095 7418331 ~ 7480048 (-) True susd6
XR_005052767.1 mRNA upstream 253511 7667747 ~ 7670221 (-) False LOC118965488
XM_036984653.1 mRNA upstream 256559 7670795 ~ 7689709 (-) True LOC110529176
XR_005052768.1 mRNA upstream 377150 7791386 ~ 7802722 (-) True LOC118965489
XM_021611432.2 mRNA upstream 528909 7943145 ~ 7944881 (-) True LOC110529310
TU762305 other downstream 66750 7325550 ~ 7334714 (-) False G669229
TU762373 other downstream 81261 7317304 ~ 7320203 (-) True G669278
TU762102 other downstream 409852 6989850 ~ 6991612 (-) False G669087
TU762377 other upstream 1789 7416025 ~ 7418235 (-) True G669281
TU763125 other upstream 693635 8107871 ~ 8110958 (-) True G669918
TU763341 other upstream 926754 8340990 ~ 8342120 (-) True G670097
TU763857 other upstream 1162815 8577051 ~ 8577780 (-) True G670549
TU764088 other upstream 1541857 8956093 ~ 8961731 (-) True G670733

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU204737 True 5401 lncRNA 0.42 2 NC_056718.1 15009339 ~ 15015372 (+)