RNA id: XR_005052767.1


Basic Information

Item Value
RNA id XR_005052767.1
length 2364
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC118965488
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 7667747 ~ 7670221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctttttctgtccatctctctctcgctatccctctttctgtccatctctctctctctcgctatccctctttctatccatctctcactcgctatccctctttctttctttccatctctttGTTCTGGAATGGACGTCCCAAAGAAAGAGTATGTGATGTTCCGTTTCTACAAAAACAAATCTAGGCGGATGTAGGTTCTGAACGATACAGCTCTGATGAGGGTTTTTTGGCTCAGTGGTTGAAGAACGCAATAAGACTTTTTTACTTTAAGTTTTCGTCAGGAAAGGACTTGTAGCCCTTGGAAGTCAGTTGCGTAACAACAAGATATGGAGGATGGTGTATGTATGATGTATATAcgtatgtttgtgtgtaaataAGAAGACATTTAACGCTTGCTTTTACCCCTCTATATATGTTCCCTTGGAGAGAAAAGAAAACAAACCAAAATTAAAACGAgccaaaatacttttttttgtcaaATACACGATTGCTTGTAGGCTTTGTGGCTGGCATTAGATTGATATAGTTCAGTTGAAATGGAACATCGTGATACTCAGGGTAAGATGGGAGCGGCCATCTTAGCATATCAAACCATTGCAGAAAATGACATGGGAGGGCCAATTAAAAAAGGGCATTGTCAGTGCCAGTAAGTCAAAGCCATTCTGTCTATTACGACACTTTCCATTTCGAACATTAAATGTTACAAATATTCTGTTAATTTATTTTACAAATGTAAAAAGATCAAAttagaaacattgaacatctttagaagctttaaaaaaaaaaaattgtttgacGGTTGAGTTGAAGTAGCTAAAGTAGCCTAATGTAATTAGCATGgagttgtaagtaacaagaacatttcccaggacatagacatatctgatattggaaaaaaaataaaaaattcttgttaatctaactgcactgtccaatttacagaagctattacaatgaaataataccatgctattgtttgaagaAAGTGCACAGTTGTGAacttaaaaatgtattaataaaccaaataAGAAAATTTGGGCAGTCTTAAAACAAAATGTTGAAcaaaaatgcaatggttcattggatccgtctaaaacgttgcacaaacactgctgccatctagtggccaaaatctcaATTGCACCTGGGCtttaataatacattatggcctttctatTGCATTTAAAAAATGATGGTACGAAAAAGTACAAATGAAACGCATGttgttttctttgtattatcttttccCAGATTTaatatgttatattctcctacattaacttaacattttcacaaacttcaaagtgtttcctttcaaatgttatcaataatatgcatatccttgcttcaggtcctgagctacaggcagatagatttgggtatgtcattttaggcaaaaaataCTTTGAGGAAGTAAAGACTATTCCCCAGGTGTTCAAGGTGTAAACTGATCCAGagtcaggtcctgagctacaggcagatagatttgggtatgtcattttaggcaaaaaataCTTTGAGGAAGTAAAGACTATTCCCCAGGTGTTCAAGGTGTAAACTGATCCAGagtcagTCAGCCTGGTGCctttggtgtcagaagtgggatcttACTCTAATCCCATTATAGCCATGGTTAGAACTAGGGCATCTGACTCAGAATGGCATGTATGTGACCGGTGTATCCTTTTCTTCTGAGATTAAAAACAAAGGAACCTTTGATGTATGATGTACACATAATACCTCATTGCTGTTGTATAATTAATTTGAtcgagaaaaaaaaaatgtgatttttttattttttcattgtaCGCTTACAGAATACAAATGGATCAACATCTTATTGCTACTGTACCATGAATCTGTAAATATTACTACTTTTCTTTTCAacacagacaccccccccccccccccccccccccccgcccaacaCCCccctacagtaaaaaaaaaaacagtcaaaTGGGAGAGTTGTTTTTATATACATATTCTATTTTTGCTTTTGTGTCTTTTGTCCAGTGCTCTTTTAATGGATAAATGATTGTtctgttttgctttgtctttgCTATTCTGTGTGTGAGAGATCGATTCGTGTAGATAAATGCTATTTAAATAATTTATCAGGATTCGCTGCCTGCGGAAGGGGGCGTGTCCGTATATGTATAAACGGTTTGCACACTGACATGAGGATGTTCTGTTTATCGTTTATGTTGTTATTTTTACCGTTATTTTTGTACAATTTAGTGAGGCTTGTTGTCTGTAAACATTTTTACTTAGTTGTGCagtgtttttaaaaaatgatgttTTTATCCATAGCAATTATTTTGTTACATATACTTCAGAAACAATAAATAGTTGTTGAAATcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU762502 lncRNA downstream 103627 7563821 ~ 7564120 (-) True G669384
TU762499 lncRNA downstream 106323 7561207 ~ 7561424 (-) True G669381
TU762498 lncRNA downstream 110898 7556005 ~ 7556849 (-) True G669380
TU762492 lncRNA downstream 122003 7545373 ~ 7545744 (-) True G669374
TU762491 lncRNA downstream 122586 7544887 ~ 7545161 (-) True G669373
TU762630 lncRNA upstream 35939 7706160 ~ 7706961 (-) True G669469
TU762642 lncRNA upstream 63888 7734109 ~ 7735354 (-) True G669480
TU762746 lncRNA upstream 154445 7824666 ~ 7825026 (-) True G669570
TU762753 lncRNA upstream 166911 7837132 ~ 7837335 (-) True G669577
TU762764 lncRNA upstream 178449 7848670 ~ 7848946 (-) True G669588
XM_036984651.1 mRNA downstream 187699 7418331 ~ 7480048 (-) True susd6
XM_021611419.2 mRNA downstream 253446 7400907 ~ 7414301 (-) False LOC110529302
XM_021611420.2 mRNA downstream 253446 7400907 ~ 7414301 (-) False LOC110529302
XM_021611422.2 mRNA downstream 253446 7400907 ~ 7414301 (-) False LOC110529302
XM_036984648.1 mRNA downstream 253446 7400907 ~ 7414301 (-) False LOC110529302
XM_036984653.1 mRNA upstream 574 7670795 ~ 7689709 (-) True LOC110529176
XR_005052768.1 mRNA upstream 121165 7791386 ~ 7802722 (-) True LOC118965489
XM_021611432.2 mRNA upstream 272924 7943145 ~ 7944881 (-) True LOC110529310
XR_005053014.1 mRNA upstream 276064 7946285 ~ 7947026 (-) False LOC118965603
XM_036984662.1 mRNA upstream 339849 8010070 ~ 8255411 (-) False LOC110529177
TU762377 other downstream 249512 7416025 ~ 7418235 (-) True G669281
TU762376 other downstream 253511 7401464 ~ 7414236 (-) True LOC110529302
TU762305 other downstream 333033 7325550 ~ 7334714 (-) False G669229
TU762373 other downstream 347544 7317304 ~ 7320203 (-) True G669278
TU762108 other downstream 676135 6989850 ~ 6991612 (-) True G669087
TU763125 other upstream 437650 8107871 ~ 8110958 (-) True G669918
TU763341 other upstream 670769 8340990 ~ 8342120 (-) True G670097
TU763857 other upstream 906830 8577051 ~ 8577780 (-) True G670549
TU764088 other upstream 1285872 8956093 ~ 8961731 (-) True G670733
TU764280 other upstream 1593629 9263850 ~ 9265093 (-) True G670905

Expression Profile