RNA id: XM_021611424.2


Basic Information

Item Value
RNA id XM_021611424.2
length 1982
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110529304
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 7340699 ~ 7369522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCGTCGCAGGCGTGTCGTGAAACGGTTGCTGTTGGTGTAGACAAGTCACGTATAAATATAGTTCGTTGAAGCTCGTTTCTTTCGTTATTGACTGCAGGGAGAGTAACGTTATTTAGTCTGTTTGTGCATTTGCTTTATCGTTAGGCGTTTGTTTCATGTTGTGAACTAGGCTACCCTTTTCATTTAAAATCCACCGTTTCACCTAAGAATGAGTGATAACGATGATATCGAAGTCGATAGCGACGCTGACAAACGAGCACACCACAATGCACTGGAGCGCAAGCGTAGGGATCACATCAAAGACAGCTTTCACAGCCTGCGAGATTCCGTGCCCGCCTTGCAAGGGGAAAAGGTTGGTAGAGAGGTGGCGTCACTCCTACGCGACGCTCGTCCCTCAACAGGGACCAGTGCAGGCGGAATCGTCGCGCTGTCTGACCAATCTATCAAACAGGCGTCCCGAGCTCAGATCCTAGACAAAGCCACGGACTATATCCAGTACATGAGGAGGAAAAACCACACCCACCAGCAGGACATCGACGACCTGAAGAGGCAGAACGCACTGCTAGAGCAGCAAGTGCGTGCCCTGGAGAAGGTGAAGGGGTCGACGCAGCTCCAGGCCAGCTACAGTTCTTCAGACAGCAGCCTGTACACCAACCCTAAAGGCAGCGCTGTGTCCGCTTTCGACGGAGGCTCTGACTCCAGCTCCGAGTCCGAGCCAGAGGAACCCCCAGCCCCCAGGAAGAAGCTCCGCGTGGAGGCCAGCTAGGACTCTGGACTAGCCCACAGTGCCACGCCTGGTGTGGATGGGTACTGCAGGCACGGGTACTGGTCCAGTAGTCCGTACTTATCCTGTAATTCCCACTACATTCTTTCTCTGGATGTGCTCTCACTGCATAGGGAAGACTACAATCCTTCCCTCATGATCTGTCTATCCTGAAGTCTCTTCATCATGCTATCcgctggagagggagggagggagggagggaagacagcTGAGAGGAAGAACATTGATTTTAGAACAAAACGTGcaaggaaaaaaaacaaaacattttccttttctcgctctctctcccctttcctctcctctctcagcaatgTCAACTATCCAAAACTCTCTCCTCCCAGTGGAAGGCTATGGAGAGAAGAGGCGTACTCCTCCAAGCACTGCTGAaatattattttgtttttttgttgtctttgtcTGTTTTAGAATTTACACACGTCAAGAAGAGTCTGTCGGAGAAGCTtaccttttttttaaaccatttttTAAAACCAACTTTTTTTCCACAAAAAGAATTTGAAGCTAAATATTGATGTAAAAGTGAAAGAAAAACCCACCTCAGGCCCATAGAATTAGTTTTCCATTTTGACACACGTTGAAATTAAAACGAATATAATCCCATTTGTAGAAAAACATTGATGTTTTGGAAAAAAGGACTAGATTCCTTCCGTCTTTTAGCTTGAACTAGTGAATGAGTTTAGGTGGCTGAGTCAGTAACCTCCAtgttttaaataaatacaaacgtTATTGATTGTATTGTTTTCAAGTTCTCAAAAAATGTTATGCATTTTGTATTCTCACAAATTTGTCACTTGTAGTTGTGCTTCAAAGGTATGAAATAGATATGAATGTCAATGTAGTTCCCATCTTCTATTCAATTTGAGGAGAAAATGACGTCCCTGTCAAGGTGTTGTGAATTACACAGTGAACTCTTAATGTCGGCGACTCCCCaagtggaaaaaaaaaaaaagaaagcgtTTTGTGTGTCTAGgaaatgtgtgtatgtatatcttTTCAAttatctcccctccctcccccattttTAGGGTATGATTAGTGTAAACTAAATAATCTTTGTCCGATTCCATTCCATGGAAATTACAAGTATGTTGTACATACTGCCGACAATTGTCTTGCAAGTTGAGGCCTACCTTTTACTATGAGACTATAAATAAAACTATTTTATCCTTTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU762306 lncRNA downstream 5985 7325550 ~ 7334714 (-) False G669229
TU762410 lncRNA upstream 17744 7387264 ~ 7388163 (-) True G669307
TU762414 lncRNA upstream 24705 7394225 ~ 7395040 (-) True G669311
TU762378 lncRNA upstream 31387 7400907 ~ 7423688 (-) False LOC110529302
TU762445 lncRNA upstream 111441 7480961 ~ 7481188 (-) True G669339
TU762446 lncRNA upstream 114114 7483634 ~ 7484459 (-) True G669340
XM_036984640.1 mRNA downstream 53309 7256917 ~ 7287390 (-) True LOC110529175
XM_036984641.1 mRNA downstream 53313 7256917 ~ 7287386 (-) False LOC110529175
XM_036986820.1 mRNA downstream 106174 7000285 ~ 7234525 (-) True sipa1l1
XM_036984639.1 mRNA downstream 374448 6855891 ~ 6966251 (-) True LOC110529169
XM_036984633.1 mRNA downstream 538796 6786377 ~ 6801903 (-) False wdr21
XM_021611419.2 mRNA upstream 31387 7400907 ~ 7414301 (-) False LOC110529302
XM_021611420.2 mRNA upstream 31387 7400907 ~ 7414301 (-) False LOC110529302
XM_021611422.2 mRNA upstream 31387 7400907 ~ 7414301 (-) False LOC110529302
XM_036984648.1 mRNA upstream 31387 7400907 ~ 7414301 (-) False LOC110529302
XM_036984651.1 mRNA upstream 48811 7418331 ~ 7480048 (-) True susd6
TU762305 other downstream 5985 7325550 ~ 7334714 (-) False G669229
TU762373 other downstream 20496 7317304 ~ 7320203 (-) True G669278
TU762103 other downstream 349087 6989850 ~ 6991612 (-) False G669087
TU762376 other upstream 31944 7401464 ~ 7414236 (-) True LOC110529302
TU762377 other upstream 46505 7416025 ~ 7418235 (-) True G669281
TU763125 other upstream 738351 8107871 ~ 8110958 (-) True G669918
TU763341 other upstream 971470 8340990 ~ 8342120 (-) True G670097
TU763857 other upstream 1207531 8577051 ~ 8577780 (-) True G670549

Expression Profile