RNA id: XM_043218598.1


Basic Information

Item Value
RNA id XM_043218598.1
length 1922
RNA type mRNA
GC content 0.55
exon number 5
gene id hlx1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24829849 ~ 24832990 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTCCTCCGCTGCGTCCTAAAATACTGAAGCATCTTCTATTTTTGGCCCGAATCTAGCAGGAATATCCGCTCGTTTAGCCCGAATCAGAGCTCATCAAAAACAGGATGACCTGCATCGAGAAACTCCCGTTTCCTCTGTTTCATCCCAGAGCATCTCAGCGGCCGCTGGGCTCTCTTATCAAGAGTCTGCATGCGTTAGAAAACGAGAAAAAGGATCAGGACGCGTGAAAAATATcgctttatacacacacacacacgcgcgcgcgcgcgcgcatcAGACGCGTAATCTAAAATTAATGCATTcgcaataaaaaacataatagctCAACGTTTAGTCAGTTTATATCCATGTTCATCAGCtaaataatgtgaaattaaaacgagctgatttaattgaaaatggAGGCCAGTGGTGGAAATGTGTAGCGTTGTGTCGTTTAATAAACCTGGTGATTTTTAAGAGTCGCGATGGAAGTGCTCGTCGTGTTTGGGGCGTGTTGGACCGTTCTGTCGACTTCCATTGGCTCACAGAGAGCCAATCAATAACGGAACTCCTGCTTAGAGCTTTTCGGACTCCTGTCTGGAGTTTCATACTTGAGGAGAAACGCGAGAGAGGCCGACTCTTACAGCCGAGCGTCGCGTTACACGCAGTTGCGCGCGGTTCCCTCGTCAAGAAGTTGTGGGCTTCTCCTGCCAGGATGTACACGGCGGGACTCAACCCGTTTTACGCGTCGAACTTCAGCCTCTGGACCGCGTACTGCTCGGGCGGCTTCGGGCTGGACAGCGTGAAGAAGCCCTCGTTCTGCATCGCCGACATTCTGCACGTCGGGGACGGGGACATCCCCGGCTCGTCCTCGCTCGCGGCGCACGTCGGGGCCCGCGCGCAGCTTCACTCGCCGGGATCCCCGTTGCGCCCGTCGCCGGTCACCCCGAGCGCGTACCACAGGCACGGAATACACTTGACCTCCAGAGCCGCGATCGGCGCGCAGCCCGCGCCCCCGCCGTCCAGCAAAGACCTCAAGTTCGGGATCGATCGGATATTATCCACAGACTTCGAGCCGAAGGGGAAGGAGTCGCTGTCGCTGAGAGATCTCACGTCGATTGTTAGTCCGAATCGGCAGGCAGCAGTCCATGTGTCTGCAAGCCCGTACTTCGCGTCCATAGACCCGACCATGAGCGAAACCTCCTCCATGATGGGTTCAATAAGCAATGCCGCGAGACAATCAGGGCAACACCAGTTTCAAGACACCTTCCCAGggCCCTACGCGGTGCTTTCCAAAGACACGATGCCGCAGACGTACAAGAGGAAGAGGTCGTGGTCCAGAGCCGTGTTCTCCAACCTCCAGCGGAAAGGCCTCGAGAAGCGCTTCGAAATCCAGAAGTACGTCACGAAGCCGGACAGAAAACAGCTGGCTGCGATGCTGGGCCTCACCGACGCGCAGGTCAAAGTTTGGTTCCAGAACCGGAGGATGAAGTGGCGGCATTCCAAAGAAGCGCAGGCGCAGAAAGACAAGGAAAAAGAGCAGCCGGATAAATCCGCGACCGACACCGAGCCCAAGGAGCGCGACGACTCCGAGTGCGAGAGCGAACCGAGCGAGTCCGAATTCGAGGACGGGGCGGAGGACAAAAGCGACGCGGACGTTTCCGACCCGAGCAAAGCCGGTGTGATTATTCCCGGCCACGACGCGTCCGGCACGAACTCCACGACAGAACCGAGCCCGGGCGCGCTGCAGACGCCGCCGTGAGGATCTTACCGGGGCGGGCGCGCGCGCGAGCGAGGAGCAAAAACACCGGAGGCCCGCCTTGAATCGATCTGGGAAGTGAACGGTCGTGAATTAAGACGTTGATAAACTtgattgtattatattttgtctGTAAGTATTTgcactgaaaatgtaaataaacgtTTGTTACTAATATTC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09339 HLX1; homeobox protein HLX1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209175 lncRNA downstream 8423 24821200 ~ 24821426 (-) True G141684
TU209174 lncRNA downstream 16693 24812825 ~ 24813156 (-) True G141683
TU209173 lncRNA downstream 31216 24794855 ~ 24798633 (-) True G141682
TU209170 lncRNA downstream 40945 24788672 ~ 24788904 (-) True G141679
TU209158 lncRNA downstream 52986 24776615 ~ 24776863 (-) True G141676
TU209531 lncRNA upstream 44758 24877748 ~ 24916483 (-) False G141889
TU209533 lncRNA upstream 47457 24880447 ~ 24916483 (-) False G141889
TU209530 lncRNA upstream 47538 24880528 ~ 24916483 (-) False G141889
TU209529 lncRNA upstream 78784 24911774 ~ 24916483 (-) True G141889
TU209548 lncRNA upstream 103681 24936671 ~ 24947770 (-) True G141899
XM_043220220.1 mRNA downstream 108743 24699172 ~ 24721106 (-) True mia3
XM_043219695.1 mRNA downstream 138760 24682627 ~ 24691089 (-) True brox
XM_043219697.1 mRNA downstream 139684 24682627 ~ 24690165 (-) False brox
XM_043219698.1 mRNA downstream 147375 24678486 ~ 24682474 (-) True LOC122324924
XM_043219699.1 mRNA downstream 152225 24674210 ~ 24677624 (-) True LOC122324925
XM_043220390.1 mRNA upstream 5662 24838652 ~ 24851779 (-) True rhpn1
XM_043220235.1 mRNA upstream 19479 24852469 ~ 24861840 (-) True naprt
XM_043220236.1 mRNA upstream 32469 24865459 ~ 24867178 (-) True c20h8orf82
XM_043218714.1 mRNA upstream 243498 25076488 ~ 25084576 (-) False tbc1d7
XM_043218712.1 mRNA upstream 243500 25076490 ~ 25085331 (-) True tbc1d7
TU209125 other downstream 182428 24571413 ~ 24647421 (-) True G141651
TU209099 other downstream 298974 24525882 ~ 24530875 (-) False slc35b2
TU209065 other downstream 568813 24257786 ~ 24261036 (-) False LOC122324315
TU208856 other downstream 823184 24004687 ~ 24006665 (-) True G141502
XR_006247216.1 other downstream 1006799 23792077 ~ 23823050 (-) False tbc1d32
TU209178 other upstream 14675 24847665 ~ 24851761 (-) False rhpn1
TU209665 other upstream 495590 25328580 ~ 25329605 (-) False wasf1
TU209701 other upstream 497936 25330926 ~ 25377416 (-) False wasf1
TU209689 other upstream 560130 25393120 ~ 25407942 (-) False mettl24
TU209680 other upstream 563218 25396208 ~ 25407942 (-) False mettl24

Expression Profile