RNA id: XM_043219886.1


Basic Information

Item Value
RNA id XM_043219886.1
length 2503
RNA type mRNA
GC content 0.52
exon number 6
gene id gata4
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25212806 ~ 25223080 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGACTGGGAGGAGTGAGACCGTCCGCCCTCATCATCCCCTGCGCGGTCGGGTCAAGCGGAGGGCGCAGGGTGAACTCAGCCCGGTCACACGCTCCGGTTCCTCGCGAGCGGAGCGCGCGCTCAGCCGCGGACATGTATCAGGGAGTAGCGATGAGCGCCAACCACGGAGCCGCGTCCTACGAGCCCGGTTTCCTCCACAGCGCCGCCCCCGCCGCGGCTTCGCCGGTGTACGTGACGCCCGCCCGGGTCGCCCCGATGCTCCCGGCGCTGCCGTACCTCCAGACGCCGCCGCAGAGCAGCCCGGTGTCCGCGCACTCGGGCTGGCCGCACGCGGGCGCGGACGCGGTCGCCTCGTACAGCTCCGCCGGCGGCCAGCATCCCCCTCCGGTCTCCAGGTTCGCGTTCTCCGCGAGCCCTCCGTCGAGCTCCGGGGCCGCGACGGCGAGCTACTCCGGCCCGCTGAACATCTCCGCCGGCGGGAGGGAGCACTACGGGTCCCGCGGGCTGAGCGGATCCTATCACGGCGGATACCCGGCCTACGTGAGCCCCGGCTTGGGAAGCTCTTGGGCGGCGTCGCACTTTGACAGCTCGGTTCTGCACAGCCTCCAGAGCGGCGGAGCGGCCGGTGCAGCGCGGCACCACGGCTTAGAGCTGCTGGATGATTTCGCTGAGGGTCGTGAGTGTGTGAACTGCGGGGCGATGTCCACTCCTCTGTGGCGGCGGGACGGGACGGGTCACTATCTGTGTAACGCCTGCGGTCTCTATCACAAGATGAACGGGATCAACCGGCCCCTCATCAAACCCCAGAGACGACTGTCTGCGTCCAGACGGGTCGGTTTGTCCTGCACTAACTGTCAGACGACCACGACCACTCTCTGGAGACGAAACGCAGAAGGAGAGCCGGTCTGTAACGCCTGCGGACTCTACATGAAACTCCACGGGGTTCCTCGTCCTCTGGCCATGAAGAAGGAGGGCATTCAGACCCGCAAACGCAAACCGAAGAACATCGGCAAGTCCAAACCCGGGTCATCTGAAGGTCAGACGCCGTCCGGAGCTTTGAGCTCCAGTCCCTCAGAAGAAGCTCGACCCATAAAGACAGAGCCGGAGACAGCATCTCtatacacacaccacaacatgaacacagcgGTCTCCGTGTTTCcgccgtacacacacacacacacaccagtctcAAGCTCTGCTCTCAAGCTTTCTCCGAGCGGATCTTCCAGCTCCAAAAGCGAGGTGTGGAACAGCCTGATCCTGGCATGAGAAGAAGCGAGGTCCTCGTGATGAGAGCGTCACTCCAGAGACGAAACCAAGACGCACAAATCTCTGTGGAAAGACACTGTACGTCCAGTGAGACCCGAGAACCAAAGCAGGAACCCTTCGGTCCCAGAAGATCACGAGAACCTCACATAACCGGAGTGTTCCGGATCACGGCCTGATGGACTCGTAGCATGTGCTTCACTCatctttaagacttttttttcatctcttttaaacCGCTGGAGTGGCATTCAGTTGCTGTAAATAAACGTGTTAGAGCtatagttcacgcaaaaattaaattttgcttCTCGGCAATGgaagtggatgggtgccgtcagaaagacaAAACaccaaactaatccagcattaagcattttttcatctaaaacacataatccataataaccgATGAACTGGATTACTCTGATGCTTTCGGGCGCTTTTTtgcattctgacggcacccatccgcaCGCATTACCGAGACACATTTCTACAGATCACCTTGgatgtaatttttgggtgaaccgtttcTTTTTCCCGCAGGAAAACAGCACACATGGATGAAAACGTTAACTTTTCCCTCTTCAGAAGCCCGTAGCACTCCTGCTGTATTTCAATgcataattctttttattttttctcacacTATATCTGCagggatgcatttatttagttttttatttaatgaacattATTGGTTATTCCTGCTCACGTTTCACCTGACCTTTGTTTGCGAAAAATTCTAATTCGGGCTTGTTTTGCGATTTCGGTTCTGTCAGGACTGTCGAGTTGACCAGAAATCTTCCtgtatagaatttttttttttttttaaataaccctCCACCACAAATTTCACTTCCTGTTCAAATCTATGAAAATCCCCTTTTAGCCGCAGCCGAGCTCCTTTAATTTGACCCtaatttctaaatgcatttttatatttatttctatatagaAAGAAGGATTACGGTTCGCATTATAGACTAAACCTTGTTAAAGTTACTCTTTGGACTGTGAAGAGGATAGAAAGTCCACGTGTAATTCGTTTCTTGTAGCAGCATCCTataatattacatgtatataactGTATGCACGCAAAACAACTCACTCCACGTTTAACTTCTATGTGGAAATTAAACTGTTTGTCATTTCAGATTCAACTTTATTCTTTCACGGAGAACAAAGTAACAAACTCAAAAAACAATGTAGCAATTAAAAACAGCTGccctaatta

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0055010 ventricular cardiac muscle tissue morphogenesis biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0061026 cardiac muscle tissue regeneration biological_process
GO:0001889 liver development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001947 heart looping biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09183 GATA4; GATA-binding protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209631 lncRNA downstream 44207 25165238 ~ 25168599 (-) True G141951
TU209611 lncRNA downstream 81614 25066735 ~ 25131192 (-) True G141941
TU209616 lncRNA downstream 93043 25068982 ~ 25119763 (-) False G141943
TU209615 lncRNA downstream 142397 25068982 ~ 25070409 (-) True G141943
TU209575 lncRNA downstream 152885 25054807 ~ 25059921 (-) True G141920
TU209658 lncRNA upstream 48462 25271542 ~ 25305703 (-) False G141966
TU209656 lncRNA upstream 48764 25271844 ~ 25305703 (-) False G141966
TU209671 lncRNA upstream 54064 25277144 ~ 25325809 (-) True G141972
TU209674 lncRNA upstream 56647 25279727 ~ 25335044 (-) True G141974
TU209679 lncRNA upstream 70222 25293302 ~ 25294448 (-) True G141979
XM_043219885.1 mRNA downstream 1210 25202243 ~ 25211596 (-) False fdft1
XM_043219884.1 mRNA downstream 3573 25202241 ~ 25209233 (-) True fdft1
XM_043218747.1 mRNA downstream 13875 25190559 ~ 25198931 (-) False ctsbb
XM_043218748.1 mRNA downstream 13879 25190559 ~ 25198927 (-) True ctsbb
XM_043219873.1 mRNA downstream 23286 25169118 ~ 25189520 (-) False LOC122325043
XM_043218756.1 mRNA upstream 103531 25326611 ~ 25357995 (-) True wasf1
XM_043220554.1 mRNA upstream 172769 25395849 ~ 25408775 (-) True mettl24
XM_043220321.1 mRNA upstream 247702 25470782 ~ 25561241 (-) False LOC122325309
XM_043220320.1 mRNA upstream 247702 25470782 ~ 25540131 (-) True LOC122325309
XM_043220319.1 mRNA upstream 247702 25470782 ~ 25480800 (-) False LOC122325309
TU209178 other downstream 361045 24847665 ~ 24851761 (-) False rhpn1
TU209125 other downstream 565385 24571413 ~ 24647421 (-) True G141651
TU209099 other downstream 681931 24525882 ~ 24530875 (-) False slc35b2
TU209065 other downstream 951770 24257786 ~ 24261036 (-) False LOC122324315
TU208856 other downstream 1206141 24004687 ~ 24006665 (-) True G141502
TU209665 other upstream 105500 25328580 ~ 25329605 (-) False wasf1
TU209701 other upstream 107846 25330926 ~ 25377416 (-) False wasf1
TU209689 other upstream 170040 25393120 ~ 25407942 (-) False mettl24
TU209680 other upstream 173128 25396208 ~ 25407942 (-) False mettl24
unassigned_transcript_2514 other upstream 410780 25633860 ~ 25633943 (-) True trnas-gcu_30

Expression Profile